SCN Proteipedia

Hg_chrom5_TN10mRNA_9906

Organism: Heterodera glycines Gene Locus: chr5:5013550-5015797 Feature type: polypeptide

Protein Sequence

Length: 545

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.64	1.365	0.734	0.886	0.917	1.082	0.502	2.202	0.775	1.066	0.945	1.079	1.478	1.658	1.685	1.52	1.083	0.639	0.141	0.108	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9320	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRDRRR,RRSHNCRPTVDGGKEKQK	—	—	15-53	0.974	—	—	0.000	—	—	0.862	0.206	0.014	0.441	0.040	0.044	0.024	0.054	0.058	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009544	1.000	1.000	Hsc_gene_20928.t1	Hsc_gene_20928.t1	—	Q3TTC2.1 Transcription factor YY2 [Mus musculus]	KAI1732908.1 zinc-finger double domain-containing protein [Ditylenchus destructor]	No	-0.180

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	—	GO:0008150_0.930\|GO:0050789_0.867\|GO:0065007_0.867\|GO:0009987_0.863\|GO:0050794_0.854\|GO:0005575_0.842\|GO:0110165_0.842\|GO:0005622_0.821\|GO:0008152_0.806\|GO:0019222_0.806\|GO:0031323_0.806\|GO:0044237_0.806\|GO:0043170_0.791\|GO:0060255_0.791\|GO:0009058_0.790\|GO:0009059_0.790\|GO:0010467_0.790\|GO:0044249_0.790\|GO:0044238_0.789\|GO:0080090_0.789\|GO:0009889_0.782\|GO:0010468_0.782\|GO:0010556_0.782\|GO:0031326_0.782\|GO:0006139_0.780\|GO:0090304_0.780\|GO:0016070_0.776\|GO:0032774_0.776\|GO:0034654_0.776\|GO:0141187_0.776\|GO:0043226_0.763\|GO:0043229_0.763\|GO:0019219_0.758\|GO:0051252_0.752\|GO:2001141_0.744\|GO:0006351_0.743\|GO:0006355_0.732\|GO:0048518_0.712\|GO:0048522_0.705\|GO:0016020_0.695\|GO:0005634_0.680\|GO:0043227_0.680\|GO:0043231_0.680\|GO:0003674_0.676\|GO:0005488_0.670\|GO:0006366_0.670\|GO:0006357_0.660\|GO:0009893_0.653\|GO:0031325_0.639\|GO:0010604_0.636\|GO:0009891_0.628\|GO:0031328_0.628\|GO:0003676_0.621\|GO:0097159_0.621\|GO:0010557_0.620\|GO:0045935_0.579\|GO:0003677_0.562\|GO:0043565_0.562\|GO:0051254_0.537\|GO:1902680_0.530\|GO:0045893_0.529\|GO:0032501_0.527\|GO:0043228_0.518\|GO:0043232_0.518\|GO:0032502_0.512\|GO:0003690_0.510\|GO:1990837_0.510	IPR013087+410-434_410-439_412-434_439-461_439-466_441-461_467-492_467-497_469-492_498-520_498-525_500-520+\|IPR036236+410-436_447-507+	SM00355+410-434_439-461_467-492_498-520+	PF00096+412-434_439-461_467-492_498-520+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000104+464-494+Transcriptional_repressor_protein_YY1\|G3DSA:3.30.160.60:FF:000450+495-521+PR_domain_zinc_finger_protein_14	PTHR14003+311-520+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-401;518-545	1.000	402-517	1ubd_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.915	61231.350	10.444	39.000	28.440	10.275	55.780	44.220	18.899	9.541	52.294

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	939.792	1547.497	1064.698	847.611	792.216	925.177	2253.861	985.467	572.511	526.007	545.937

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.770	-1.006	-0.219	-0.129	0.239	1.296	—	1.336	—	—	—	—	—

No JSON data available for plots.

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