Hg_chrom5_TN10mRNA_9908
Organism: Heterodera glycines Gene Locus: chr5:5024269-5025316 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.319 | 1.155 | 1.418 | 0.0 | 0.946 | 1.455 | 0.76 | 1.418 | 0.315 | 1.342 | 1.504 | 1.669 | 0.985 | 0.546 | 0.579 | 0.912 | 0.349 | 0.86 | 2.182 | 1.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9322
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.691
|
0.181
|
0.635
|
0.407
|
0.208
|
0.442
|
0.007
|
0.289
|
0.471
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009546
|
1.000
|
1.000
|
Hsc_gene_20926.t1
|
Hsc_gene_20926.t1
|
— | — |
KAI6175364.1 GLOBIN domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
— |
IPR000971+23-134+|IPR009050+18-136+|IPR012292+3-138+
|
— |
PF00042+23-134+Globin
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-141
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
15986.000
|
6.881
|
1.000
|
29.078
|
14.184
|
48.227
|
51.773
|
15.603
|
13.475
|
47.518
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
2498.188
|
1117.488
|
7044.048
|
1537.831
|
418.085
|
714.205
|
325.332
|
14460.667
|
853.924
|
682.510
|
755.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.429
|
0.323
|
-2.089
|
-1.911
|
0.786
|
-1.124
|
4.239
|
-5.332
|
— | — | — | — | — |
No JSON data available for plots.