SCN Proteipedia

Hg_chrom5_TN10mRNA_9910

Organism: Heterodera glycines Gene Locus: chr5:5033374-5035040 Feature type: polypeptide

Protein Sequence

Length: 338

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.86	0.619	0.753	0.51	0.74	0.986	0.634	2.219	1.118	1.719	0.852	0.522	1.89	0.569	1.147	0.93	1.067	1.121	2.731	0.783	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9324	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.935

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	endoplasmic_reticulum	—	—	97-118	0.980	—	—	—	—	0.000	—	—	0.072	0.433	0.029	0.080	0.940	0.072	0.300	0.027	0.134	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000757	3.000	3.000	Hsc_gene_20923.t1;Hsc_gene_4267.t1;Hsc_gene_4742.t1	Hsc_gene_20923.t1	—	G5ED44.1 Delta(9)-fatty-acid desaturase fat-5 [Caenorhabditis elegans]	KAI1732895.1 delta(9)-fatty-acid desaturase fat-7 [Ditylenchus destructor]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006629\|GO:0016717	GO:0008150_0.917\|GO:0009987_0.812\|GO:0003674_0.743\|GO:0008152_0.698\|GO:0044238_0.674\|GO:0044237_0.671\|GO:0009058_0.669\|GO:0044249_0.643\|GO:0044281_0.638\|GO:0003824_0.635\|GO:0006629_0.624\|GO:0044255_0.614\|GO:0006082_0.611\|GO:0019752_0.611\|GO:0043436_0.611\|GO:0006631_0.606\|GO:0032787_0.606\|GO:0005575_0.591\|GO:0110165_0.584\|GO:0016491_0.551\|GO:0008610_0.547\|GO:0016705_0.537\|GO:0044283_0.536\|GO:0016020_0.533\|GO:0006633_0.531\|GO:0016053_0.531\|GO:0046394_0.531\|GO:0072330_0.531\|GO:0016717_0.529	IPR005804+77-282+\|IPR015876+17-326_48-68_73-95_73-313_96-116_133-162_194-212_227-248_270-284+	—	PF00487+77-282+Fatty_acid_desaturase	—	PTHR11351+17-326+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-338	4zyo_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.707	38899.070	9.610	16.500	24.260	17.456	43.787	56.213	15.680	8.580	44.379

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	darkred	1136.525	3.696	9.389	1577.049	1796.947	3224.111	5609.221	67.221	3.278	361.975	208.248

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.116	8.609	7.508	—	0.857	0.811	-5.722	6.537	-6.949	9.180	—	—	—

No JSON data available for plots.

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