Hg_chrom5_TN10mRNA_9911
Organism: Heterodera glycines Gene Locus: chr5:5035334-5041978 Feature type: polypeptideProtein Sequence
Length: 1,261
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 1.088 | 1.067 | 0.656 | 1.242 | 1.098 | 0.793 | 1.427 | 1.022 | 1.211 | 1.057 | 1.26 | 1.476 | 0.702 | 1.198 | 0.94 | 0.884 | 0.877 | 1.098 | 0.583 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9325
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KKKK,KKRK,KRKL,RRETDEQTEPKRIGR,RKEFAELLDELRAKRKSE,RRGAFPLLNALHEARCKPK
|
— | — | — | — |
1-18
|
0.965
|
0.999
|
0.000
|
0.000
|
0.242
|
0.220
|
0.017
|
0.497
|
0.135
|
0.087
|
0.281
|
0.115
|
0.315
|
0.583
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009548
|
1.000
|
1.000
|
Hsc_gene_20921.t1
|
Hsc_gene_20921.t1;Hsc_gene_20922.t1
|
— |
H2A0L4.1 Putative chitinase 1 [Pinctada margaritifera]
|
KAH7732355.1 Protein C25A8.4 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0008061
|
GO:0008150_0.954|GO:0003674_0.883|GO:0005575_0.821|GO:0110165_0.821|GO:0008152_0.601|GO:0065007_0.569|GO:0043170_0.564|GO:0005622_0.562|GO:0050789_0.548|GO:0005488_0.545|GO:0009987_0.544|GO:0050896_0.531|GO:0032501_0.522
|
IPR001223+46-423_68-399_441-805_461-780_933-1216+|IPR011583+453-780+|IPR017853+73-417_458-802_933-1235+|IPR029070+282-369_665-751_1133-1187+|IPR050314+71-422+
|
SM00636+453-780+
|
PF00704+68-399_461-780_933-1216+Glycosyl_hydrolases_family_18
|
— |
PTHR11177+71-422+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
285-345;850-893
|
3.000
|
1-284;346-849;894-1261
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
142179.350
|
7.107
|
12.000
|
29.025
|
11.578
|
49.960
|
50.040
|
15.702
|
13.323
|
48.136
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
919.419
|
198.040
|
156.065
|
217.771
|
260.895
|
848.990
|
5395.783
|
166.280
|
35.502
|
1279.396
|
746.299
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.574
|
— |
0.589
|
0.228
|
1.716
|
2.679
|
-2.469
|
5.167
|
— | — | — | — | — |