Hg_chrom5_TN10mRNA_9912
Organism: Heterodera glycines Gene Locus: chr5:5042121-5045715 Feature type: polypeptideProtein Sequence
Length: 638
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.203 | 1.13 | 0.627 | 1.892 | 1.071 | 1.045 | 0.709 | 1.489 | 0.662 | 0.826 | 0.689 | 0.738 | 1.132 | 1.296 | 1.983 | 1.545 | 0.617 | 0.57 | 0.844 | 0.461 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9326
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKKCQMEANPKEKNRQK,RRCRSVDGRGERRRKSA,RKRRQRRREHRKRRQKL,QRHLRKRRQRRREHRKRRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.388
|
0.127
|
0.004
|
0.605
|
0.050
|
0.063
|
0.174
|
0.129
|
0.411
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009549
|
1.000
|
1.000
|
Hsc_gene_20920.t1
|
Hsc_gene_20920.t1
|
— |
O43900.2 Prickle planar cell polarity protein 3 [Homo sapiens]
|
KAI1726419.1 PET domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0005575_0.831|GO:0110165_0.826|GO:0008150_0.792|GO:0005622_0.711|GO:0009987_0.680|GO:0016020_0.573|GO:0065007_0.569|GO:0050789_0.565|GO:0050794_0.552|GO:0032501_0.544|GO:0032502_0.527|GO:0048856_0.523|GO:0043226_0.505
|
IPR001781+131-197_132-190_133-193_198-255_199-233_199-255_262-328_263-319+|IPR010442+18-127_23-119+|IPR047120+18-540+
|
SM00132+132-190_198-255_263-319+
|
PF00412+133-193_199-255+LIM_domain|PF06297+23-119+PET_Domain
|
G3DSA:2.10.110.10:FF:000005+196-259+Testin_isoform_1
|
PTHR24211+18-540+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;330-638
|
1.000
|
7-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.917
|
70552.450
|
8.960
|
37.500
|
27.116
|
9.718
|
50.627
|
49.373
|
17.241
|
9.875
|
55.172
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
219.706
|
480.403
|
362.560
|
302.416
|
296.903
|
293.502
|
377.512
|
275.836
|
29.612
|
43.081
|
37.308
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.634
|
-0.804
|
— | — | — |
0.373
|
— |
0.596
|
— | — | — | — | — |
No JSON data available for plots.