Hg_chrom5_TN10mRNA_9913
Organism: Heterodera glycines Gene Locus: chr5:5049355-5052819 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 1.559 | 0.636 | 0.503 | 1.506 | 0.972 | 0.833 | 0.583 | 1.101 | 0.906 | 1.855 | 1.715 | 1.134 | 0.336 | 1.904 | 0.958 | 1.051 | 0.663 | 0.449 | 0.257 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9327
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.810
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,RRKR,KKWKKRETKGGAKRKSL,RETAKAPKGTERFVVLKRKKRPAEKGTERKRKRIGKKWKKRETKGGAKRKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.951
|
0.050
|
0.007
|
0.176
|
0.023
|
0.004
|
0.021
|
0.005
|
0.031
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009550
|
1.000
|
1.000
|
Hsc_gene_20919.t1
|
Hsc_gene_20919.t1
|
— |
P42696.2 RNA-binding protein 34 [Homo sapiens]
|
KAH7725572.1 RNA recognition domain-containing protein [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.902|GO:0110165_0.902|GO:0005622_0.875|GO:0043226_0.800|GO:0043229_0.794|GO:0016020_0.771|GO:0003674_0.729|GO:0043227_0.726|GO:0043231_0.721|GO:0005488_0.694|GO:0005634_0.618|GO:0097159_0.607|GO:0003676_0.597|GO:0008150_0.597|GO:0003723_0.590|GO:0009987_0.509
|
IPR000504+88-183_89-179_190-267_191-263_192-260+|IPR012677+25-179_180-271+|IPR035979+70-180_188-277+
|
SM00360+89-179_191-263+
|
PF00076+192-260+RNA_recognition_motif
|
— |
PTHR23236+188-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-101;264-343
|
1.000
|
102-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
39127.820
|
10.834
|
33.000
|
35.277
|
6.706
|
58.892
|
41.108
|
22.741
|
12.536
|
44.315
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
paleturquoise
|
1703.256
|
1692.984
|
2294.721
|
1335.761
|
1498.972
|
1243.462
|
1813.687
|
1184.068
|
2672.289
|
1298.658
|
1887.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.209
|
-0.479
|
-0.671
|
0.134
|
-0.255
|
0.555
|
— |
0.759
|
— | — | — | — | — |
No JSON data available for plots.