Hg_chrom5_TN10mRNA_9914
Organism: Heterodera glycines Gene Locus: chr5:5055992-5056851 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.073 | 0.699 | 0.531 | 1.41 | 1.775 | 0.641 | 0.769 | 2.051 | 1.767 | 1.399 | 0.452 | 0.214 | 0.888 | 0.471 | 0.549 | 0.757 | 1.049 | 0.0 | 0.679 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9328
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.650
|
0.242
|
0.085
|
0.648
|
0.209
|
0.129
|
0.135
|
0.030
|
0.082
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009551
|
1.000
|
1.000
|
Hsc_gene_20918.t1
|
Hsc_gene_20918.t1
|
— |
Q21568.1 NHP2-like protein 1 homolog [Caenorhabditis elegans]
|
KIH57170.1 50S ribosomal protein L7Ae family protein [Ancylostoma duodenale]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0005730|GO:0042254|GO:1990904
|
GO:0005575_0.897|GO:0110165_0.819|GO:0008150_0.745|GO:0005622_0.728|GO:0009987_0.703|GO:0043226_0.655|GO:0043229_0.640|GO:0016020_0.621|GO:0003674_0.585|GO:0043227_0.550|GO:0043231_0.523|GO:0032991_0.518
|
IPR002415+10-23_23-38_40-50_84-96+|IPR004037+75-92+|IPR004038+23-113+|IPR018492+37-51_56-69_72-82_82-96+|IPR029064+2-130_8-128+|IPR050257+7-122+
|
— |
PF01248+23-113+Ribosomal_protein_L7Ae/L30e/S12e/Gadd45_family
|
G3DSA:3.30.1330.30:FF:000002+3-130+NHP2-like_protein_1_homolog
|
PTHR23105+7-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-130
|
8y6o_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
14228.560
|
6.464
|
0.000
|
25.385
|
4.615
|
45.385
|
54.615
|
13.077
|
12.308
|
45.385
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgrey
|
2136.877
|
1337.670
|
754.748
|
3277.483
|
3192.316
|
1920.879
|
950.207
|
650.755
|
1028.208
|
4046.161
|
2752.752
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.054
|
1.156
|
2.226
|
— |
-0.717
|
-1.005
|
-1.663
|
0.688
|
— | — | — | — | — |
No JSON data available for plots.