Hg_chrom5_TN10mRNA_9919
Organism: Heterodera glycines Gene Locus: chr5:5069604-5070721 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.659 | 1.036 | 0.662 | 0.558 | 1.35 | 0.727 | 0.193 | 1.012 | 1.35 | 1.587 | 1.595 | 2.62 | 1.237 | 1.324 | 1.322 | 0.752 | 0.73 | 0.981 | 0.311 | 0.834 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9332
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
AGKKRNEKR,KRTQYEKWLNEKDEKRRAE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.074
|
0.966
|
0.014
|
0.266
|
0.038
|
0.020
|
0.067
|
0.011
|
0.025
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009554
|
1.000
|
1.000
|
Hsc_gene_20914.t1
|
Hsc_gene_20914.t1
|
— |
Q60R52.2 Small ribosomal subunit protein uS7m [Caenorhabditis briggsae]
|
KAK6021134.1 ribosomal protein S7p/S5e [Ostertagia ostertagi]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006412
|
GO:0005575_0.924|GO:0110165_0.922|GO:0005622_0.889|GO:0043226_0.850|GO:0016020_0.849|GO:0043229_0.843|GO:0005737_0.807|GO:0043227_0.796|GO:0043231_0.781|GO:0005739_0.572
|
IPR000235+84-240+|IPR023798+81-239+|IPR036823+39-239_76-245+
|
— |
PF00177+81-239+Ribosomal_protein_S7p/S5e
|
— |
PTHR11205+84-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-247
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
28792.080
|
10.117
|
15.500
|
30.769
|
9.717
|
47.773
|
52.227
|
19.028
|
11.741
|
40.081
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2274.276
|
1076.440
|
1354.732
|
1770.575
|
1997.715
|
1688.526
|
1625.562
|
1610.390
|
2145.506
|
4169.349
|
3301.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.102
|
0.581
|
0.495
|
0.142
|
-0.228
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.