Hg_chrom5_TN10mRNA_9920
Organism: Heterodera glycines Gene Locus: chr5:5071352-5073420 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.1 | 0.838 | 0.901 | 1.243 | 1.201 | 1.155 | 0.697 | 1.351 | 1.502 | 1.157 | 1.297 | 1.855 | 1.126 | 0.347 | 1.195 | 0.708 | 0.886 | 0.887 | 0.0 | 0.927 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9333
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKNGNVSLAKKRKAS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.835
|
0.268
|
0.032
|
0.406
|
0.040
|
0.036
|
0.047
|
0.138
|
0.085
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009555
|
1.000
|
1.000
|
Hsc_gene_20913.t1
|
Hsc_gene_20913.t1
|
— |
P68563.1 Thymidine kinase [Vaccinia virus WR]
|
KAF7638612.1 Thymidine kinase [Meloidogyne graminicola]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004797|GO:0005524
|
GO:0003674_0.860|GO:0008150_0.760|GO:0009987_0.695|GO:0005488_0.688|GO:0005515_0.648|GO:0008152_0.632|GO:0044238_0.614|GO:0042802_0.585|GO:0006139_0.568|GO:0005575_0.567|GO:0110165_0.562|GO:0044281_0.556|GO:0044237_0.545|GO:0009058_0.541|GO:0003824_0.538|GO:0055086_0.527|GO:0005622_0.512
|
IPR001267+7-192_7-193_10-179+|IPR027417+7-141_9-141+
|
— |
PF00265+10-179+Thymidine_kinase
|
G3DSA:3.40.50.300:FF:001270+8-141+Thymidine_kinase
|
PTHR11441+7-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-222
|
2j87_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
24972.910
|
8.479
|
8.000
|
29.279
|
9.910
|
47.748
|
52.252
|
17.117
|
12.162
|
45.495
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
746.677
|
516.056
|
418.907
|
411.141
|
1318.796
|
1891.187
|
830.145
|
770.912
|
259.945
|
762.821
|
547.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.532
|
-0.465
|
— |
1.649
|
0.535
|
-1.177
|
-1.407
|
— | — | — | — | — | — |
No JSON data available for plots.