Hg_chrom5_TN10mRNA_9922
Organism: Heterodera glycines Gene Locus: chr5:5079449-5081252 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 0.77 | 0.43 | 0.652 | 0.946 | 0.97 | 0.732 | 0.709 | 1.734 | 1.789 | 0.931 | 0.834 | 1.707 | 0.818 | 0.627 | 0.946 | 0.93 | 1.612 | 0.546 | 0.834 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9335
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.899
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRKL
|
26-65
|
0.963
|
— | — | — | — |
0.000
|
— | — |
0.103
|
0.095
|
0.023
|
0.087
|
0.317
|
0.284
|
0.791
|
0.079
|
0.273
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009556
|
1.000
|
1.000
|
Hsc_gene_20911.t1
|
Hsc_gene_20911.t1
|
— |
Q58DA6.1 UDP-galactose translocator [Bos taurus]
|
KAI1732921.1 nucleotide-sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000139|GO:0015165|GO:0016020|GO:0090481
|
GO:0005575_0.870|GO:0110165_0.868|GO:0071944_0.837|GO:0016020_0.831|GO:0005886_0.826|GO:0008150_0.801|GO:0009987_0.757|GO:0005622_0.742|GO:0005737_0.742|GO:0006810_0.734|GO:0051179_0.734|GO:0051234_0.734|GO:0043226_0.700|GO:0055085_0.696|GO:0043229_0.688|GO:0043227_0.668|GO:0005773_0.657|GO:0043231_0.657|GO:0012505_0.629|GO:0003674_0.625|GO:0005215_0.570|GO:0022857_0.570|GO:0071705_0.550|GO:0015711_0.545|GO:1901264_0.531
|
IPR007271+25-417_38-380_39-388+
|
— |
PF04142+38-380+Nucleotide-sugar_transporter
|
— |
PTHR10231+39-388+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;423-423
|
1.000
|
12-422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
46746.240
|
8.453
|
8.000
|
18.676
|
11.111
|
38.061
|
61.939
|
10.638
|
8.038
|
47.754
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
947.676
|
986.708
|
978.623
|
1049.827
|
1073.526
|
926.462
|
1071.444
|
1102.858
|
714.011
|
914.532
|
828.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.241
|
— |
0.210
|
— |
-0.198
|
0.220
|
— | — | — | — | — | — | — |
No JSON data available for plots.