Hg_chrom5_TN10mRNA_9930
Organism: Heterodera glycines Gene Locus: chr5:5113581-5115024 Feature type: polypeptideProtein Sequence
Length: 231
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.805 | 1.338 | 0.0 | 1.587 | 2.442 | 0.464 | 0.0 | 1.251 | 1.053 | 1.377 | 5.348 | 0.481 | 0.333 | 1.502 | 0.742 | 0.639 | 0.722 | 0.0 | 0.127 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9343
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — |
66-86
|
0.989
|
— | — | — | — |
0.000
|
— | — |
0.220
|
0.302
|
0.032
|
0.280
|
0.142
|
0.485
|
0.214
|
0.053
|
0.252
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009564
|
1.000
|
1.000
|
Hsc_gene_20902.t1
|
Hsc_gene_20902.t1
|
— |
Q6DFS6.1 Charged multivesicular body protein 2a [Xenopus tropicalis]
|
CDP95331.1 BMA-VPS-2 [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007034
|
GO:0005575_0.929|GO:0110165_0.917|GO:0005622_0.907|GO:0008150_0.804|GO:0009987_0.761|GO:0005737_0.758|GO:0016020_0.738|GO:0043226_0.737|GO:0043229_0.724|GO:0043227_0.663|GO:0043231_0.634|GO:0051179_0.629|GO:0051234_0.619|GO:0051641_0.617|GO:0006810_0.609|GO:0071840_0.601|GO:0016043_0.591|GO:0071944_0.571|GO:0016192_0.569|GO:0005886_0.553|GO:0006996_0.519|GO:0051649_0.516|GO:0061024_0.507|GO:0008152_0.506|GO:0043170_0.506|GO:0044238_0.501
|
IPR005024+4-229_17-185+
|
— |
PF03357+17-185+Snf7
|
— |
PTHR10476+4-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
93-231
|
1.000
|
1-92
|
7zch_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
26419.490
|
5.602
|
-1.000
|
33.333
|
2.165
|
55.411
|
44.589
|
16.450
|
16.883
|
39.827
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3277.982
|
5792.911
|
3017.179
|
2510.441
|
2568.852
|
2825.502
|
2185.128
|
3082.354
|
3902.965
|
3170.560
|
3484.448
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.170
|
-1.343
|
-0.157
|
— |
0.152
|
-0.360
|
— |
-0.354
|
— | — | — | — | — |
No JSON data available for plots.