Hg_chrom5_TN10mRNA_9932
Organism: Heterodera glycines Gene Locus: chr5:5127260-5128123 Feature type: polypeptideProtein Sequence
Length: 86
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 2.975 | 0.634 | 0.802 | 0.775 | 1.193 | 1.107 | 0.0 | 1.034 | 0.314 | 0.352 | 2.052 | 1.615 | 0.671 | 1.187 | 0.831 | 1.334 | 1.409 | 0.894 | 1.026 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9345
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.809
|
0.252
|
0.011
|
0.526
|
0.082
|
0.040
|
0.036
|
0.010
|
0.035
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009566
|
1.000
|
1.000
|
Hsc_gene_20900.t1
|
Hsc_gene_20900.t1
|
— |
Q8HXM1.1 Cleavage stimulation factor subunit 2 [Bos taurus]
|
KAF7635567.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.853|GO:0005575_0.778|GO:0110165_0.763|GO:0009987_0.669|GO:0005622_0.654|GO:0003674_0.653|GO:0005488_0.645|GO:0016020_0.610|GO:0043226_0.600|GO:0043229_0.593|GO:0008152_0.571|GO:0043170_0.566|GO:0043227_0.566|GO:0043231_0.560|GO:0044238_0.559|GO:0009058_0.515|GO:0009059_0.515|GO:0010467_0.515|GO:0044237_0.515|GO:0044249_0.515|GO:0097159_0.502
|
IPR000504+6-84_7-80_8-78+|IPR012677+2-86+|IPR035979+4-85+
|
SM00360+7-80+
|
PF00076+8-78+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000748+1-84+RNA_Binding_Motif_protein_homolog
|
PTHR45735+6-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
86-86
|
1.000
|
1-85
|
6q2i_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.916
|
9485.550
|
6.162
|
0.000
|
16.279
|
10.465
|
47.674
|
52.326
|
8.140
|
8.140
|
61.628
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
3887.851
|
2148.058
|
2122.593
|
5525.428
|
6463.053
|
5109.275
|
3147.603
|
2966.890
|
2737.273
|
4650.305
|
3830.434
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.247
|
1.226
|
1.489
|
0.194
|
-0.324
|
-0.689
|
-0.888
|
0.228
|
— | — | — | — | — |
No JSON data available for plots.