Hg_chrom5_TN10mRNA_9935
Organism: Heterodera glycines Gene Locus: chr5:5132767-5142155 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.99 | 0.77 | 0.516 | 0.897 | 0.591 | 0.606 | 0.816 | 1.655 | 1.051 | 1.406 | 0.358 | 1.113 | 2.233 | 1.455 | 1.303 | 0.946 | 0.814 | 0.931 | 1.455 | 1.669 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9348
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— |
KPRK,RHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.047
|
0.069
|
0.020
|
0.081
|
0.653
|
0.329
|
0.457
|
0.002
|
0.629
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009569
|
1.000
|
1.000
|
Hsc_gene_20897.t1
|
Hsc_gene_20897.t1
|
— |
Q7Z2D5.1 Phospholipid phosphatase-related protein type 4 [Homo sapiens]
|
KAF7640359.1 acidPPc domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006644
|
GO:0005575_0.868|GO:0110165_0.860|GO:0008150_0.796|GO:0016020_0.794|GO:0071944_0.776|GO:0005886_0.754|GO:0009987_0.689|GO:0003674_0.568
|
IPR000326+147-293_150-296+|IPR036938+44-296+|IPR043216+59-304+
|
SM00014+147-293+
|
PF01569+150-296+PAP2_superfamily
|
— |
PTHR10165+59-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
350-423
|
1.000
|
1-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
47929.470
|
8.862
|
17.000
|
18.440
|
18.913
|
35.697
|
64.303
|
12.057
|
6.383
|
49.409
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
507.559
|
457.212
|
213.345
|
325.955
|
562.330
|
872.883
|
524.170
|
483.597
|
126.745
|
835.701
|
531.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.331
|
-0.625
|
0.722
|
0.754
|
0.650
|
-0.726
|
-0.966
|
— | — | — | — | — | — |
No JSON data available for plots.