Hg_chrom5_TN10mRNA_9936
Organism: Heterodera glycines Gene Locus: chr5:5142788-5146507 Feature type: polypeptideProtein Sequence
Length: 566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.027 | 0.867 | 0.609 | 1.237 | 1.042 | 0.547 | 1.06 | 1.61 | 1.433 | 0.937 | 1.455 | 1.521 | 1.019 | 1.514 | 1.136 | 0.753 | 0.535 | 0.544 | 0.468 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9349
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.921
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQCMDENSIYSPFFRPKK,RRALNTLLFSLIKIDRSKR,KRIEEKSGVKNKQIERWKR
|
16-40
|
0.972
|
— | — | — | — |
0.000
|
— | — |
0.903
|
0.215
|
0.006
|
0.223
|
0.032
|
0.055
|
0.031
|
0.044
|
0.029
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009570
|
1.000
|
1.000
|
Hsc_gene_20896.t3
|
Hsc_gene_20896.t1;Hsc_gene_20896.t2;Hsc_gene_20896.t3
|
— | — |
KAH7727297.1 CRE-HPR-17 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006281
|
GO:0008150_0.944|GO:0009987_0.901|GO:0050896_0.773|GO:0051716_0.750|GO:0005575_0.726|GO:0110165_0.723|GO:0006950_0.715|GO:0033554_0.697|GO:0005622_0.681|GO:0006974_0.678|GO:0043226_0.651|GO:0043229_0.641|GO:0065007_0.612|GO:0050789_0.605|GO:0050794_0.586|GO:0016020_0.577|GO:0008152_0.572|GO:0044238_0.560|GO:0043170_0.546|GO:0003674_0.526|GO:0071840_0.526|GO:0006139_0.519|GO:0043227_0.518|GO:0016043_0.517|GO:0090304_0.503|GO:0048519_0.502|GO:0043231_0.501
|
IPR004582+39-268+|IPR027417+38-201_38-280+
|
— |
PF03215+39-194+Rad17_P-loop_domain
|
— |
PTHR12172+39-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-566
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
64166.840
|
8.753
|
14.000
|
27.915
|
9.894
|
48.940
|
51.060
|
15.724
|
12.191
|
44.700
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
1396.637
|
1961.481
|
1874.183
|
1703.314
|
1491.210
|
1272.216
|
1412.221
|
1462.321
|
1523.070
|
776.627
|
1096.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.296
|
-0.341
|
— |
-0.224
|
-0.214
|
0.160
|
— | — | — | — | — | — | — |
No JSON data available for plots.