Hg_chrom5_TN10mRNA_9937
Organism: Heterodera glycines Gene Locus: chr5:5148457-5151222 Feature type: polypeptideProtein Sequence
Length: 299
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 0.544 | 1.52 | 0.692 | 1.895 | 1.201 | 0.478 | 1.672 | 0.892 | 0.904 | 0.963 | 3.148 | 0.557 | 0.45 | 3.686 | 1.051 | 0.219 | 0.507 | 0.0 | 0.295 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9350
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.695
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKKR,RKPSRRSRSRDRRRH.,RRSEKRRADDKDREERRRRSGREDDRDRKRERSRSRSRSHSRKHRRSRSRSRDRKPSRRSRSRDRRRH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.906
|
0.105
|
0.001
|
0.161
|
0.072
|
0.080
|
0.066
|
0.001
|
0.056
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009571
|
1.000
|
1.000
|
Hsc_gene_20895.t2
|
Hsc_gene_20895.t1;Hsc_gene_20895.t2
|
— |
Q9NQ29.1 Putative RNA-binding protein Luc7-like 1 [Homo sapiens]
|
KAH7727298.1 LUC7-related [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003729|GO:0005685|GO:0006376
|
GO:0005575_0.692|GO:0110165_0.687|GO:0005622_0.668|GO:0043226_0.625|GO:0043229_0.625|GO:0016020_0.620|GO:0003674_0.603|GO:0005488_0.603|GO:0005634_0.600|GO:0043227_0.600|GO:0043231_0.600|GO:0008150_0.540
|
IPR004882+1-298_3-241+
|
— |
PF03194+3-241+LUC7_N_terminus
|
— |
PTHR12375+1-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;153-299
|
1.000
|
23-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
35785.490
|
10.333
|
19.000
|
47.492
|
6.355
|
63.211
|
36.789
|
27.759
|
19.732
|
37.124
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
1871.345
|
2237.329
|
2014.614
|
2359.570
|
2240.169
|
2058.526
|
2224.150
|
2665.984
|
1944.917
|
803.317
|
1292.574
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.380
|
— |
0.336
|
-0.107
|
— | — |
0.269
|
— | — | — | — | — | — |
No JSON data available for plots.