Hg_chrom5_TN10mRNA_9938
Organism: Heterodera glycines Gene Locus: chr5:5152591-5154362 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.514 | 1.174 | 0.918 | 0.979 | 1.157 | 1.213 | 1.014 | 1.735 | 1.122 | 1.364 | 0.335 | 1.113 | 1.314 | 0.971 | 1.416 | 0.811 | 1.189 | 1.052 | 0.971 | 0.557 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9351
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.741
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.141
|
0.056
|
0.003
|
0.150
|
0.879
|
0.344
|
0.440
|
0.004
|
0.278
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004108
|
2.000
|
1.000
|
Hsc_gene_20894.t1
|
Hsc_gene_20894.t1
|
— |
Q09216.2 Putative endoplasmic reticulum metallopeptidase 1-A [Caenorhabditis elegans]
|
KAI1727718.1 peptidase family m28 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008235
|
GO:0008150_0.750|GO:0005575_0.691|GO:0110165_0.691|GO:0005622_0.569|GO:0016020_0.543
|
IPR007484+169-309+|IPR045175+28-310+|IPR048024+86-310+
|
— |
PF04389+169-309+Peptidase_family_M28
|
G3DSA:3.40.630.10:FF:000008+83-312+Endoplasmic_reticulum_metallopeptidase_1
|
PTHR12147+28-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
35531.220
|
5.946
|
-3.500
|
24.606
|
11.356
|
47.319
|
52.681
|
12.618
|
11.987
|
50.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
367.858
|
361.986
|
237.853
|
379.353
|
1206.749
|
518.473
|
370.602
|
360.506
|
45.829
|
286.685
|
183.461
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.835
|
— |
0.782
|
1.638
|
-1.205
|
-0.472
|
-0.626
|
— | — | — | — | — | — |
No JSON data available for plots.