Hg_chrom5_TN10mRNA_9939
Organism: Heterodera glycines Gene Locus: chr5:5156976-5158428 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.044 | 0.149 | 0.816 | 0.884 | 0.641 | 0.657 | 0.687 | 0.962 | 1.282 | 0.953 | 1.166 | 2.262 | 2.315 | 1.109 | 1.439 | 1.374 | 0.946 | 0.583 | 0.493 | 1.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9352
|
— | — |
1.778
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRMRSVLGRSIFGRRRAS
|
28-48
|
0.999
|
18-42
|
0.992
|
— | — |
0.000
|
— | — |
0.303
|
0.366
|
0.043
|
0.504
|
0.241
|
0.200
|
0.287
|
0.048
|
0.264
|
0.221
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004109
|
2.000
|
1.000
|
Hsc_gene_8582.t1
|
Hsc_gene_8582.t1
|
— |
Q5EA90.1 Transmembrane protein 106A [Bos taurus]
|
KAI1726852.1 transmembrane protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.945|GO:0110165_0.941|GO:0008150_0.921|GO:0016020_0.894|GO:0009987_0.871|GO:0005622_0.852|GO:0032501_0.759|GO:0043226_0.664|GO:0043229_0.645|GO:0043227_0.637|GO:0043231_0.633|GO:0005737_0.625|GO:0003674_0.605|GO:0071944_0.596|GO:0065007_0.594|GO:0050789_0.587|GO:0005886_0.584|GO:0050794_0.566|GO:0051179_0.543|GO:0005488_0.525|GO:0008152_0.519|GO:0005515_0.509|GO:0032502_0.509|GO:0048856_0.509|GO:0005773_0.507|GO:0071840_0.507|GO:0044238_0.506|GO:0016043_0.503|GO:0048518_0.502
|
IPR009790+46-116+|IPR048511+72-114+
|
— |
PF21002+72-114+Transmembrane_protein_106_N-terminal_region
|
— |
PTHR28556+46-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-156
|
8ote_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
17627.530
|
10.108
|
11.500
|
25.000
|
14.744
|
43.590
|
56.410
|
16.667
|
8.333
|
47.436
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
186.452
|
521.374
|
159.678
|
135.410
|
114.304
|
139.381
|
53.531
|
105.387
|
88.255
|
288.636
|
202.759
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.938
|
-2.082
|
— |
-0.277
|
0.301
|
-1.373
|
— |
-0.841
|
— | — | — | — | — |
No JSON data available for plots.