Hg_chrom5_TN10mRNA_9942
Organism: Heterodera glycines Gene Locus: chr5:5172191-5173990 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.052 | 1.218 | 0.866 | 0.903 | 0.754 | 1.343 | 0.454 | 1.31 | 1.005 | 1.287 | 0.685 | 1.821 | 1.587 | 1.007 | 1.846 | 0.476 | 1.093 | 0.938 | 1.099 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9354
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKYR,PQKKRKY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.804
|
0.168
|
0.033
|
0.423
|
0.081
|
0.055
|
0.035
|
0.011
|
0.106
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000050
|
16.000
|
7.000
|
Hsc_gene_11413.t1;Hsc_gene_11455.t1;Hsc_gene_20685.t1;Hsc_gene_2731.t1;Hsc_gene_3115.t1;Hsc_gene_595.t1;Hsc_gene_7820.t1
|
Hsc_gene_11387.t2;Hsc_gene_11413.t1;Hsc_gene_14079.t1;Hsc_gene_20685.t1;Hsc_gene_25489.t1;Hsc_gene_8491.t1
|
— | — |
ADM16639.1 transposase, partial [Meloidogyne javanica]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+162-252+
|
— |
PF10551+162-252+MULE_transposase_domain
|
— |
PTHR47160+154-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
48483.070
|
9.864
|
23.500
|
25.476
|
12.619
|
45.952
|
54.048
|
16.190
|
9.286
|
46.905
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
73.868
|
7.470
|
11.444
|
10.244
|
13.881
|
8.520
|
3.146
|
5.512
|
0.000
|
300.593
|
171.767
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.428
|
— | — |
-9.003
|
4.213
|
-3.951
|
— | — |
No JSON data available for plots.