Hg_chrom5_TN10mRNA_9944
Organism: Heterodera glycines Gene Locus: chr5:5177650-5181994 Feature type: polypeptideProtein Sequence
Length: 926
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 0.954 | 0.746 | 0.559 | 0.756 | 1.025 | 0.771 | 1.674 | 1.224 | 1.532 | 0.311 | 1.525 | 1.92 | 1.018 | 1.322 | 0.895 | 1.08 | 1.162 | 1.329 | 0.762 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9356
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.070
|
0.059
|
0.006
|
0.118
|
0.763
|
0.554
|
0.402
|
0.005
|
0.441
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004108
|
2.000
|
1.000
|
Hsc_gene_20894.t1
|
Hsc_gene_20894.t1
|
— |
Q09216.2 Putative endoplasmic reticulum metallopeptidase 1-A [Caenorhabditis elegans]
|
KAI1727718.1 peptidase family m28 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008235
|
GO:0008150_0.815|GO:0005575_0.710|GO:0110165_0.710|GO:0016020_0.631|GO:0005622_0.538|GO:0009987_0.512
|
IPR007484+169-364+|IPR045175+34-681+|IPR048024+86-399+|IPR053973+670-890+|IPR053974+433-654+
|
— |
PF04389+169-364+Peptidase_family_M28|PF22248+670-890+Endoplasmic_reticulum_metallopeptidase_1,_C-terminal_domain|PF22249+433-654+Endoplasmic_reticulum_metallopeptidase_1,_TM_domain
|
G3DSA:3.40.630.10:FF:000008+83-384+Endoplasmic_reticulum_metallopeptidase_1
|
PTHR12147+34-681+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-926
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
104528.610
|
7.491
|
14.500
|
20.518
|
14.579
|
41.469
|
58.531
|
11.879
|
8.639
|
48.920
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
4460.767
|
5805.712
|
2993.261
|
4860.085
|
9697.101
|
6384.293
|
4487.474
|
3813.865
|
964.173
|
4527.055
|
3000.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.185
|
-0.394
|
0.807
|
0.965
|
-0.589
|
-0.499
|
-0.847
|
0.376
|
-2.345
|
— | — | — | — |
No JSON data available for plots.