Hg_chrom5_TN10mRNA_9945
Organism: Heterodera glycines Gene Locus: chr5:5182261-5185061 Feature type: polypeptideProtein Sequence
Length: 523
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.023 | 1.156 | 0.869 | 0.725 | 0.765 | 0.833 | 0.683 | 1.434 | 1.317 | 1.447 | 0.724 | 0.9 | 1.062 | 0.809 | 1.249 | 2.103 | 0.627 | 0.666 | 1.03 | 0.45 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9357
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKAPSSKIDGKRRSI
|
— | — |
17-41
|
0.996
|
— | — |
0.000
|
— | — |
0.609
|
0.121
|
0.014
|
0.498
|
0.156
|
0.339
|
0.357
|
0.023
|
0.067
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009572
|
1.000
|
1.000
|
Hsc_gene_20893.t1
|
Hsc_gene_20893.t1
|
— |
A8WSU9.1 Pre-rRNA-processing protein pro-1 [Caenorhabditis briggsae]
|
KAI1720110.1 pre-rRNA-processing protein pro-1 [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.712|GO:0005575_0.630|GO:0110165_0.627|GO:0005622_0.569|GO:0009987_0.538|GO:0043226_0.524|GO:0043229_0.509
|
IPR001680+127-166_129-165_182-224_289-329_297-338_298-329+|IPR015943+83-290_291-393+|IPR036322+99-350+|IPR045227+9-510+
|
SM00320+127-166_182-224_289-329+
|
PF00400+129-165_298-329+WD_domain,_G-beta_repeat
|
— |
PTHR18763+9-510+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
509-523
|
1.000
|
1-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.932
|
57104.680
|
8.687
|
15.500
|
23.136
|
9.560
|
49.904
|
50.096
|
13.767
|
9.369
|
53.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2597.140
|
2772.388
|
1251.657
|
1528.869
|
1637.478
|
1596.879
|
1798.146
|
1578.693
|
1097.038
|
5978.166
|
3886.254
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.378
|
-0.996
|
0.398
|
— | — |
0.182
|
— |
0.331
|
-2.558
|
— |
-1.591
|
— | — |
No JSON data available for plots.