SCN Proteipedia

Hg_chrom5_TN10mRNA_9946

Organism: Heterodera glycines Gene Locus: chr5:5185180-5189014 Feature type: polypeptide

Protein Sequence

Length: 866

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.913	0.806	0.945	0.398	2.194	1.451	0.605	0.982	1.54	1.061	1.557	1.223	0.674	0.644	1.202	0.742	0.719	0.927	0.266	0.475	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9358	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.989

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKKEKEKEKKEKEKEKKE,KKKKDKKKEKEKEKKEKEK,KKDKKKEKEKEKKEKEKEK,KKEKEKEKKESGGKKKNKQ,KKKNKQAELIKELLKRRQE,KRQEEEEERRQEEQQRKKE,KKEEQERIAQEKKEEVKRRKAELIQKQKREG	—	—	—	—	—	—	0.000	—	—	0.359	0.105	0.018	0.596	0.271	0.095	0.203	0.012	0.149	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009573	1.000	1.000	Hsc_gene_20892.t1	Hsc_gene_20892.t1	—	O60841.4 Eukaryotic translation initiation factor 5B [Homo sapiens]	KAH7730574.1 eukaryotic translation initiation factor 5B [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525	GO:0005575_0.934\|GO:0110165_0.934\|GO:0005622_0.801\|GO:0008150_0.653\|GO:0005737_0.643\|GO:0009987_0.630\|GO:0003674_0.626\|GO:0005488_0.621\|GO:0016020_0.601\|GO:0043226_0.566\|GO:0043229_0.541\|GO:0065007_0.510	IPR000795+274-491_278-291_278-487_344-354_360-371_396-405+\|IPR005225+277-405+\|IPR009000+734-865+\|IPR015760+14-855+\|IPR023115+605-713+\|IPR027417+268-498_273-567+\|IPR029459+736-828+\|IPR036925+617-727_620-721+	—	PF00009+278-487+Elongation_factor_Tu_GTP_binding_domain\|PF11987+605-713+Translation-initiation_factor_2\|PF14578+736-828+Elongation_factor_Tu_domain_4	G3DSA:2.40.30.10:FF:000013+499-618+eukaryotic_translation_initiation_factor_5B\|G3DSA:2.40.30.10:FF:000026+729-866+Eukaryotic_translation_initiation_factor_5B\|G3DSA:3.40.50.10050:FF:000002+618-722+Eukaryotic_translation_initiation_factor_5B\|G3DSA:3.40.50.300:FF:000112+268-498+Eukaryotic_translation_initiation_factor_5B	PTHR43381+14-855+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-264	1.000	265-866	8pj5_0	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.647	98307.780	5.634	-10.500	36.490	6.351	55.196	44.804	18.129	18.360	41.801

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	paleturquoise	2833.015	2727.318	2528.557	2804.311	3206.233	3239.354	2811.628	2265.625	4525.844	1656.424	2886.175

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.339	-0.097	0.259	0.161	—	-0.194	-0.620	0.454	1.344	—	—	—	—

No JSON data available for plots.

Back to Browser