Hg_chrom5_TN10mRNA_9948
Organism: Heterodera glycines Gene Locus: chr5:5191950-5192774 Feature type: polypeptideProtein Sequence
Length: 182
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.278 | 0.999 | 1.326 | 1.007 | 0.845 | 0.981 | 0.549 | 1.832 | 1.262 | 1.082 | 0.97 | 1.068 | 0.634 | 0.897 | 0.863 | 0.991 | 0.916 | 0.423 | 0.646 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9360
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.460
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.266
|
0.638
|
0.139
|
0.636
|
0.101
|
0.144
|
0.058
|
0.274
|
0.053
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009575
|
1.000
|
1.000
|
Hsc_gene_20890.t1
|
Hsc_gene_20890.t1
|
— |
Q8K4G6.2 ADP-ribose glycohydrolase MACROD1 [Rattus norvegicus]
|
KHN74108.1 O-acetyl-ADP-ribose deacetylase MACROD2 [Toxocara canis]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.829|GO:0005575_0.639|GO:0110165_0.626|GO:0003674_0.573|GO:0009987_0.568|GO:0005622_0.527
|
IPR002589+1-181_8-140_25-140+|IPR043472+2-181_8-180+
|
SM00506+8-140+
|
PF01661+25-140+Macro_domain
|
— |
PTHR11106+7-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-182
|
6lh4_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
19888.900
|
7.024
|
1.000
|
24.176
|
7.692
|
45.055
|
54.945
|
12.637
|
11.538
|
52.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
961.468
|
922.563
|
668.848
|
802.542
|
1087.799
|
873.167
|
922.550
|
913.212
|
799.356
|
1285.402
|
1077.096
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.695
|
-0.338
|
0.372
|
0.407
|
-0.303
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.