Hg_chrom5_TN10mRNA_9952
Organism: Heterodera glycines Gene Locus: chr5:5213309-5215764 Feature type: polypeptideProtein Sequence
Length: 511
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 0.956 | 1.494 | 0.337 | 1.859 | 1.104 | 0.792 | 0.685 | 0.913 | 1.058 | 1.571 | 1.381 | 0.978 | 0.565 | 1.438 | 0.783 | 1.091 | 0.712 | 0.452 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9364
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKATKDDERKRSKREKN,RVKRKLQDQREGKRAKRAAGGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.896
|
0.025
|
0.004
|
0.137
|
0.037
|
0.033
|
0.055
|
0.005
|
0.061
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004112
|
1.000
|
2.000
|
Hsc_gene_20882.t1;Hsc_gene_20882.t2
|
Hsc_gene_20882.t1
|
— |
Q4R713.1 Spliceosome-associated protein CWC27 homolog [Macaca fascicularis]
|
KAH7727398.1 Protein CYN-16 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.879|GO:0110165_0.879|GO:0005622_0.792|GO:0016020_0.761|GO:0043226_0.741|GO:0043229_0.711|GO:0043227_0.666|GO:0008150_0.637|GO:0043231_0.611|GO:0003674_0.536|GO:0005634_0.524
|
IPR002130+17-165_18-165_28-43_54-66_111-123_124-139+|IPR020892+49-66+|IPR029000+2-180_14-183+|IPR044666+10-174+
|
— |
PF00160+17-165+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000007+1-177+Peptidyl-prolyl_cis-trans_isomerase_CWC27_homolog
|
PTHR45625+10-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
159-511
|
1.000
|
1-158
|
4r3e_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
58163.200
|
5.452
|
-6.500
|
38.160
|
7.045
|
58.708
|
41.292
|
18.787
|
19.374
|
45.793
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1801.139
|
3449.040
|
1818.233
|
1322.585
|
1494.809
|
1384.279
|
1385.530
|
1295.364
|
2629.973
|
1351.312
|
1899.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.154
|
-1.520
|
-0.350
|
0.145
|
— | — | — |
0.240
|
— | — | — | — | — |
No JSON data available for plots.