Hg_chrom5_TN10mRNA_9953
Organism: Heterodera glycines Gene Locus: chr5:5215858-5221347 Feature type: polypeptideProtein Sequence
Length: 779
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 0.925 | 1.144 | 1.107 | 1.177 | 1.382 | 0.627 | 1.99 | 0.827 | 1.093 | 0.875 | 1.661 | 1.319 | 0.987 | 1.546 | 0.789 | 0.8 | 0.895 | 0.691 | 1.057 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9365
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.577
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKLETITSKRKERERMR,RKERKLETITSKRKERER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.401
|
0.333
|
0.012
|
0.675
|
0.126
|
0.152
|
0.200
|
0.015
|
0.327
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009578
|
1.000
|
1.000
|
Hsc_gene_20881.t1
|
Hsc_gene_20880.t1;Hsc_gene_20881.t1
|
— |
G5EF51.1 Lim and transglutaminase domain protein ltd-1 [Caenorhabditis elegans]
|
KAH7727400.1 kyphoscoliosis peptidase-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.905|GO:0110165_0.905|GO:0005622_0.851|GO:0005737_0.691|GO:0043226_0.585|GO:0043229_0.561
|
IPR001781+12-79_13-72_14-50_14-72+|IPR002931+378-446+|IPR038765+303-462+|IPR053041+7-776+
|
SM00132+13-72+|SM00460+378-446+
|
PF00412+14-72+LIM_domain
|
G3DSA:2.10.110.10:FF:000108+8-79+LIM_domain_containing_protein
|
PTHR47020+7-776+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
66-305
|
2.000
|
1-65;306-779
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
89887.050
|
7.499
|
15.500
|
30.680
|
13.222
|
50.449
|
49.551
|
17.330
|
13.350
|
46.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
936.474
|
1191.062
|
529.827
|
732.880
|
762.078
|
2769.860
|
811.066
|
2973.149
|
152.510
|
318.972
|
247.631
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.397
|
-0.838
|
0.576
|
— |
1.877
|
-1.761
|
— |
-1.730
|
— | — | — | — | — |
No JSON data available for plots.