Hg_chrom5_TN10mRNA_9957
Organism: Heterodera glycines Gene Locus: chr5:5235551-5238335 Feature type: polypeptideProtein Sequence
Length: 471
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.913 | 1.383 | 0.888 | 0.732 | 0.991 | 0.871 | 0.784 | 0.743 | 0.802 | 1.406 | 0.869 | 0.874 | 1.533 | 0.857 | 1.517 | 1.183 | 0.557 | 0.997 | 2.123 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9369
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKYGLVSFGPAQRLRRV
|
39-65
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.179
|
0.804
|
0.285
|
0.185
|
0.211
|
0.066
|
0.094
|
0.193
|
0.225
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009582
|
1.000
|
1.000
|
Hsc_gene_20876.t1
|
Hsc_gene_20876.t1
|
— |
Q10123.2 Uncharacterized protein F52C9.3 [Caenorhabditis elegans]
|
KAI1720050.1 diacylglycerol kinase catalytic domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016301
|
GO:0008150_0.942|GO:0005575_0.886|GO:0110165_0.884|GO:0009987_0.878|GO:0003674_0.864|GO:0005622_0.813|GO:0016020_0.794|GO:0043226_0.769|GO:0043229_0.760|GO:0003824_0.755|GO:0005737_0.755|GO:0043227_0.732|GO:0043231_0.721|GO:0016740_0.693|GO:0016772_0.660|GO:0016301_0.656|GO:0016773_0.655|GO:0001727_0.650|GO:0004143_0.650|GO:0047620_0.650|GO:0005739_0.561
|
IPR001206+60-157_64-161+|IPR016064+62-278+|IPR017438+54-184+|IPR050187+38-318+
|
— |
PF00781+64-161+Diacylglycerol_kinase_catalytic_domain
|
— |
PTHR12358+38-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-471
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
53234.730
|
9.186
|
14.500
|
25.478
|
11.890
|
46.497
|
53.503
|
14.650
|
10.828
|
50.106
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2192.470
|
2556.601
|
3108.066
|
2501.233
|
2393.216
|
1679.704
|
1945.757
|
2321.417
|
1226.271
|
2482.604
|
1944.175
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.169
|
-0.205
|
-0.096
|
-0.496
|
0.222
|
0.361
|
— | — | — | — | — | — |
No JSON data available for plots.