Hg_chrom5_TN10mRNA_9958
Organism: Heterodera glycines Gene Locus: chr5:5239597-5241003 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.286 | 1.235 | 0.483 | 1.373 | 0.811 | 1.135 | 0.474 | 0.885 | 0.688 | 1.076 | 0.469 | 1.562 | 0.86 | 1.276 | 2.528 | 1.264 | 0.943 | 0.805 | 0.681 | 0.651 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9370
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRRK,RRRR,RRSSASRAYVVKRQRS,RRTATATTAPGKRRRSS
|
56-84
|
0.989
|
1-39
|
1.000
|
— | — |
0.000
|
— | — |
0.025
|
0.060
|
0.011
|
0.061
|
0.140
|
0.138
|
0.147
|
0.010
|
0.143
|
0.883
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009583
|
1.000
|
1.000
|
Hsc_gene_20875.t1
|
Hsc_gene_20875.t1
|
— | — |
KAF7640342.1 IlGF domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005179|GO:0005576
|
GO:0008150_0.858|GO:0005575_0.832|GO:0110165_0.829|GO:0009987_0.799|GO:0050896_0.668|GO:0065007_0.642|GO:0051716_0.635|GO:0050789_0.634|GO:0050794_0.621|GO:0005576_0.575|GO:0042221_0.570|GO:0003674_0.565|GO:0005615_0.553|GO:1901700_0.547|GO:0070887_0.543|GO:1901701_0.532|GO:0005622_0.528|GO:0005488_0.523
|
IPR016179+105-200+|IPR036438+102-203+|IPR040228+74-203+
|
SM00078+105-200+
|
PF00049+105-200+Insulin/IGF/Relaxin_family
|
— |
PTHR13647+74-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
206-226
|
1.000
|
1-205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
25354.040
|
10.775
|
20.000
|
24.779
|
7.965
|
49.115
|
50.885
|
17.257
|
7.522
|
53.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
367.869
|
358.903
|
666.531
|
267.126
|
135.093
|
136.151
|
123.938
|
326.942
|
100.746
|
778.359
|
487.954
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
-0.563
|
-1.210
|
-1.016
|
— | — |
1.163
|
-1.257
|
— | — | — | — |
6.242
|
No JSON data available for plots.