Hg_chrom5_TN10mRNA_9959
Organism: Heterodera glycines Gene Locus: chr5:5243484-5245508 Feature type: polypeptideProtein Sequence
Length: 198
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.352 | 0.235 | 1.102 | 0.174 | 1.178 | 0.518 | 0.661 | 3.283 | 0.898 | 0.819 | 0.536 | 1.783 | 2.525 | 2.428 | 1.443 | 0.794 | 0.745 | 0.383 | 3.108 | 1.783 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9371
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.941
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
18-38
|
0.997
|
9-33
|
0.999
|
— | — |
0.000
|
— | — |
0.132
|
0.867
|
0.015
|
0.179
|
0.157
|
0.027
|
0.055
|
0.013
|
0.033
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009584
|
1.000
|
1.000
|
Hsc_gene_20874.t1
|
Hsc_gene_20874.t1
|
— |
O95178.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial [Homo sapiens]
|
KAI6206524.1 Protein F44G4.2 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0005747
|
GO:0005575_0.836|GO:0110165_0.836|GO:0005622_0.782|GO:0016020_0.761|GO:0005737_0.760|GO:0043226_0.741|GO:0043227_0.722|GO:0043229_0.721|GO:0043231_0.709|GO:0005739_0.569
|
IPR026627+113-176_126-177+
|
— |
PF14813+113-176+NADH_dehydrogenase_1_beta_subcomplex_subunit_2
|
— |
PTHR15223+126-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-198
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
23910.010
|
6.690
|
1.500
|
30.303
|
25.758
|
43.434
|
56.566
|
17.172
|
13.131
|
41.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
2740.126
|
467.566
|
2249.397
|
2510.376
|
3385.773
|
3236.766
|
2271.836
|
3209.971
|
3661.090
|
2742.850
|
3136.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.038
|
2.288
|
0.267
|
0.400
|
— |
-0.501
|
— |
-0.356
|
— | — | — | — | — |
No JSON data available for plots.