Hg_chrom5_TN10mRNA_9963
Organism: Heterodera glycines Gene Locus: chr5:5255236-5257798 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 0.863 | 0.825 | 0.853 | 1.031 | 0.793 | 1.743 | 0.722 | 0.687 | 0.752 | 0.75 | 1.092 | 0.745 | 2.855 | 1.094 | 1.09 | 0.744 | 0.5 | 0.793 | 0.546 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9375
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
KRKKKKRKMKKRI
|
31-62
|
0.991
|
50-71
|
0.999
|
— | — |
0.000
|
— | — |
0.059
|
0.069
|
0.005
|
0.136
|
0.406
|
0.187
|
0.292
|
0.011
|
0.550
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002216
|
1.000
|
3.000
|
Hsc_gene_20870.t1;Hsc_gene_20870.t2;Hsc_gene_20870.t4
|
Hsc_gene_20870.t3
|
— |
P35799.1 Cuticle collagen dpy-2 [Caenorhabditis elegans]
|
KAI1727774.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.947|GO:0032502_0.858|GO:0048856_0.858|GO:0032501_0.854|GO:0007275_0.820|GO:0065007_0.679|GO:0042303_0.676|GO:0018996_0.670|GO:0040002_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0050789_0.659|GO:0005575_0.583|GO:0110165_0.583|GO:0009653_0.516
|
IPR002486+147-197_150-193+|IPR008160+290-346_354-412+|IPR050632+150-420+
|
SM01088+147-197+
|
PF01391+290-346_354-412+Collagen_triple_helix_repeat_(20_copies)|PF01484+150-193+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+150-420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
66-142;230-485
|
2.000
|
1-65;143-229
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
50543.510
|
6.804
|
1.500
|
22.474
|
7.010
|
41.443
|
58.557
|
11.753
|
10.722
|
62.887
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
912.386
|
537.499
|
59.295
|
50.338
|
3561.235
|
3216.704
|
295.331
|
354.281
|
96.377
|
891.400
|
550.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.411
|
-3.553
|
— |
6.113
|
— |
-3.437
|
-3.299
|
— | — | — | — | — | — |
No JSON data available for plots.