Hg_chrom5_TN10mRNA_9965
Organism: Heterodera glycines Gene Locus: chr5:5264644-5267607 Feature type: polypeptideProtein Sequence
Length: 569
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.96 | 0.654 | 0.511 | 0.97 | 0.937 | 1.172 | 0.795 | 2.109 | 0.742 | 1.52 | 0.426 | 1.447 | 1.806 | 1.082 | 1.686 | 1.004 | 0.691 | 1.039 | 1.893 | 0.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9377
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KRRCAVSTEMLKTRRH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.255
|
0.388
|
0.026
|
0.313
|
0.746
|
0.339
|
0.492
|
0.058
|
0.206
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009589
|
1.000
|
1.000
|
Hsc_gene_20868.t1
|
Hsc_gene_20868.t1
|
— |
P97872.4 Flavin-containing monooxygenase 5 [Mus musculus]
|
KAI1727839.1 flavin-binding monooxygenase-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004499|GO:0050660|GO:0050661
|
GO:0008150_0.861|GO:0009987_0.743|GO:0003674_0.679|GO:0008152_0.616|GO:0044237_0.571|GO:0005575_0.560|GO:0110165_0.558|GO:0003824_0.534|GO:0016020_0.527
|
IPR000960+16-566_18-34_42-66_165-181_195-209_222-237_345-372_395-412+|IPR020946+19-536+|IPR036188+12-412_16-262_341-483+|IPR050346+19-529+
|
— |
PF00743+19-536+Flavin-binding_monooxygenase-like
|
G3DSA:3.50.50.60:FF:000159+17-424+Dimethylaniline_monooxygenase_[N-oxide-forming]
|
PTHR23023+19-529+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-569
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
64460.480
|
9.129
|
27.000
|
23.726
|
14.587
|
42.355
|
57.645
|
15.290
|
8.436
|
47.100
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
lightyellow
|
1685.483
|
600.368
|
798.660
|
972.858
|
1197.986
|
1400.134
|
1854.748
|
2062.826
|
30.954
|
4017.928
|
2309.225
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.183
|
0.559
|
0.393
|
0.269
|
0.239
|
0.416
|
0.455
|
— |
-7.140
|
5.179
|
— | — | — |
No JSON data available for plots.