Hg_chrom5_TN10mRNA_9966
Organism: Heterodera glycines Gene Locus: chr5:5268058-5271135 Feature type: polypeptideProtein Sequence
Length: 629
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 0.813 | 1.156 | 1.096 | 0.715 | 1.386 | 0.795 | 1.113 | 1.166 | 0.945 | 0.482 | 1.216 | 0.927 | 1.743 | 1.265 | 1.476 | 0.73 | 1.156 | 0.245 | 0.795 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9378
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-30
|
0.754
|
1.000
|
1.000
|
1.000
|
0.104
|
0.018
|
0.048
|
0.244
|
0.292
|
0.302
|
0.515
|
0.054
|
0.668
|
0.186
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009590
|
1.000
|
1.000
|
Hsc_gene_20867.t1
|
Hsc_gene_20867.t1
|
— |
Q21540.2 Cuticlin-6 [Caenorhabditis elegans]
|
KAI1727771.1 zona pellucida-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.938|GO:0110165_0.938|GO:0071944_0.822|GO:0030312_0.564|GO:0031012_0.552|GO:0062023_0.552|GO:0060102_0.540
|
IPR001507+47-272_47-277+|IPR051962+34-340+
|
SM00241+47-277+
|
— | — |
PTHR22907+34-340+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
268-455
|
2.000
|
1-267;456-629
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
68505.470
|
6.381
|
-1.000
|
22.258
|
8.585
|
45.946
|
54.054
|
11.606
|
10.652
|
58.029
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
35.516
|
83.009
|
53.898
|
27.472
|
23.928
|
44.056
|
71.526
|
96.587
|
1.028
|
4.432
|
2.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.855
|
-1.732
|
-0.860
|
— |
0.895
|
0.711
|
1.026
|
— | — |
4.644
|
— | — | — |