Hg_chrom5_TN10mRNA_9967
Organism: Heterodera glycines Gene Locus: chr5:5273529-5275405 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 0.887 | 0.693 | 0.506 | 0.635 | 0.376 | 0.559 | 2.053 | 1.303 | 1.149 | 0.666 | 1.035 | 2.199 | 1.41 | 1.496 | 1.257 | 1.058 | 1.066 | 2.481 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9379
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
45-85
|
0.993
|
31-63
|
0.998
|
— | — |
0.001
|
— | — |
0.133
|
0.031
|
0.007
|
0.143
|
0.685
|
0.285
|
0.834
|
0.025
|
0.140
|
0.197
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009591
|
1.000
|
1.000
|
Hsc_gene_20866.t1
|
Hsc_gene_20866.t1
|
— |
Q09363.1 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase sqv-8 [Caenorhabditis elegans]
|
KAI1727770.1 glycosyltransferase family 43 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015018|GO:0016020
|
GO:0008150_0.754|GO:0003674_0.752|GO:0003824_0.675|GO:0005575_0.615|GO:0009987_0.609|GO:0110165_0.606|GO:0016740_0.577|GO:0016020_0.544|GO:0016757_0.544|GO:0008152_0.542|GO:0016758_0.507
|
IPR005027+101-326_106-326_127-326+|IPR029044+105-337_106-327+
|
— |
PF03360+127-326+Glycosyltransferase_family_43
|
G3DSA:3.90.550.10:FF:000147+105-337+Galactosylgalactosylxylosylprotein_3-beta-glucuronosyltransferase
|
PTHR10896+101-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-341
|
2d0j_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
39125.190
|
10.303
|
21.000
|
23.460
|
17.302
|
43.988
|
56.012
|
15.836
|
7.625
|
49.560
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
767.263
|
196.041
|
899.581
|
297.184
|
326.255
|
343.728
|
1065.157
|
793.950
|
157.252
|
1768.126
|
1077.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.968
|
0.463
|
-1.488
|
— | — |
1.643
|
1.106
|
0.565
|
-3.608
|
— | — | — | — |
No JSON data available for plots.