SCN Proteipedia

Hg_chrom5_TN10mRNA_9972

Organism: Heterodera glycines Gene Locus: chr5:5288588-5296633 Feature type: polypeptide

Protein Sequence

Length: 1,812

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.539	0.347	0.803	0.419	0.901	0.976	3.344	0.662	0.564	0.835	0.51	1.493	0.721	3.216	1.014	0.402	0.443	0.468	0.509	0.422	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9384	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	RRYQRNWHDNQRERQK	46-72	0.990	—	—	—	—	0.000	—	—	0.208	0.049	0.027	0.264	0.089	0.075	0.060	0.004	0.160	0.682

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	Hsc_gene_20861.t1	—	P17139.5 Collagen alpha-1(IV) chain [Caenorhabditis elegans]	KAI6174956.1 Collagen alpha-1(IV) chain [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005201\|GO:0005581	GO:0005575_0.907\|GO:0110165_0.900\|GO:0008150_0.805\|GO:0030312_0.804\|GO:0071944_0.804\|GO:0003674_0.746\|GO:0009987_0.722\|GO:0031012_0.678\|GO:0062023_0.678\|GO:0032501_0.609\|GO:0032502_0.608\|GO:0048856_0.608\|GO:0007275_0.582\|GO:0048731_0.570\|GO:0065007_0.521\|GO:0005576_0.508\|GO:0050789_0.501	IPR001442+1584-1693_1584-1808_1586-1691_1694-1807_1696-1806+\|IPR008160+216-269_308-362_354-411_453-506_602-660_669-725_714-770_779-835_816-873_875-932_971-1028_1010-1068_1061-1118_1122-1174_1156-1213_1216-1271_1264-1318_1320-1376_1425-1483_1494-1550_1526-1577+\|IPR016187+1583-1692_1695-1806+\|IPR036954+1581-1807+\|IPR050149+875-1775+	SM00111+1584-1693_1694-1807+	PF01391+216-269_308-362_354-411_453-506_602-660_669-725_714-770_779-835_816-873_875-932_971-1028_1010-1068_1061-1118_1122-1174_1156-1213_1216-1271_1264-1318_1320-1376_1425-1483_1494-1550_1526-1577+Collagen_triple_helix_repeat_(20_copies)\|PF01413+1586-1691_1696-1806+C-terminal_tandem_repeated_domain_in_type_4_procollagen	G3DSA:2.170.240.10:FF:000001+1581-1808+Collagen_IV_alpha_1_chain	PTHR24023+875-1775+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1597	1.000	1598-1812	1t61_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.938	177927.620	5.530	-15.000	19.481	6.015	30.298	69.702	9.658	9.823	65.177

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	3073.429	3732.482	1961.199	3020.378	2937.310	13813.847	1628.181	6562.253	29.789	803.043	471.648

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.156	-0.442	0.731	—	2.249	-3.077	-1.184	-1.868	-4.888	6.858	—	—	—

No JSON data available for plots.

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