Hg_chrom5_TN10mRNA_9973
Organism: Heterodera glycines Gene Locus: chr5:5296800-5299312 Feature type: polypeptideProtein Sequence
Length: 315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.403 | 0.886 | 0.346 | 0.766 | 1.217 | 1.465 | 0.605 | 1.27 | 0.705 | 1.03 | 1.299 | 2.054 | 0.617 | 1.526 | 1.166 | 1.633 | 0.937 | 0.385 | 0.244 | 0.187 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9385
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.924
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
TKKRNLTPSDGQKNKKGAKKKTEENGKREEKKT
|
38-66
|
0.959
|
13-33
|
0.951
|
— | — |
0.000
|
— | — |
0.869
|
0.147
|
0.007
|
0.241
|
0.033
|
0.017
|
0.042
|
0.013
|
0.037
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009596
|
1.000
|
1.000
|
Hsc_gene_20860.t1
|
Hsc_gene_20860.t1
|
— |
Q2MJB4.1 Doublesex- and mab-3-related transcription factor A2 [Xenopus laevis]
|
KAI6186196.1 Doublesex- and mab-3-related transcription factor A1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0005634|GO:0006355|GO:0043565
|
GO:0008150_0.787|GO:0003674_0.692|GO:0005488_0.692|GO:0032501_0.646|GO:0009987_0.625|GO:0032502_0.623|GO:0048856_0.623|GO:0005575_0.611|GO:0110165_0.608|GO:0007275_0.573|GO:0003676_0.568|GO:0097159_0.568|GO:0005622_0.547|GO:0003677_0.532|GO:0043226_0.531|GO:0043229_0.512
|
IPR001275+49-95_49-102_53-82_53-100+|IPR026607+33-303+|IPR036407+45-95_47-95+
|
SM00301+49-102+
|
PF00751+49-95+DM_DNA_binding_domain
|
G3DSA:4.10.1040.10:FF:000001+46-95+doublesex-_and_mab-3-related_transcription_factor_1
|
PTHR12322+33-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-315
|
0.000
|
— |
4yj0_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
34067.830
|
10.322
|
20.000
|
26.032
|
5.714
|
52.698
|
47.302
|
16.825
|
9.206
|
52.698
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
59.002
|
84.889
|
93.970
|
55.226
|
24.290
|
22.388
|
42.503
|
51.514
|
4.820
|
113.978
|
67.196
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.757
|
-0.659
|
-1.218
|
— |
0.934
|
1.097
|
— |
-4.671
|
3.722
|
— | — | — |
No JSON data available for plots.