Hg_chrom5_TN10mRNA_9976
Organism: Heterodera glycines Gene Locus: chr5:5307513-5308567 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.447 | 0.93 | 1.051 | 0.0 | 2.296 | 1.709 | 0.582 | 1.333 | 1.086 | 1.321 | 1.684 | 1.83 | 0.494 | 0.598 | 0.454 | 0.635 | 0.51 | 0.808 | 0.342 | 0.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9388
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.619
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — |
48-68
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.162
|
0.497
|
0.025
|
0.382
|
0.160
|
0.611
|
0.223
|
0.025
|
0.282
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009599
|
1.000
|
1.000
|
Hsc_gene_20857.t1
|
— | — |
Q9D8B3.2 Charged multivesicular body protein 4b [Mus musculus]
|
KAI1727748.1 snf7 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007034
|
GO:0008150_0.923|GO:0005575_0.915|GO:0110165_0.907|GO:0005622_0.895|GO:0009987_0.877|GO:0016020_0.822|GO:0043226_0.817|GO:0043227_0.744|GO:0005737_0.708|GO:0043229_0.689|GO:0071944_0.684|GO:0005886_0.680|GO:0051179_0.676|GO:0051234_0.667|GO:0006810_0.662|GO:0071840_0.650|GO:0016043_0.640|GO:0051641_0.626|GO:0016192_0.625|GO:0008152_0.614|GO:0051649_0.613|GO:0043231_0.611|GO:0046907_0.601|GO:0006996_0.570|GO:0043170_0.507|GO:0044237_0.507|GO:0032991_0.504
|
IPR005024+6-207_23-200+
|
— |
PF03357+23-200+Snf7
|
— |
PTHR22761+6-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
94-225
|
1.000
|
1-93
|
5j45_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
24930.190
|
4.699
|
-11.000
|
35.556
|
5.333
|
53.778
|
46.222
|
16.000
|
19.556
|
43.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
orange
|
1922.927
|
1267.225
|
1529.694
|
1422.493
|
1907.354
|
2212.062
|
1788.187
|
3276.999
|
2767.255
|
1310.858
|
1935.028
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.391
|
0.229
|
-0.296
|
0.464
|
-0.731
|
— | — | — | — | — |
No JSON data available for plots.