Hg_chrom5_TN10mRNA_9977
Organism: Heterodera glycines Gene Locus: chr5:5308755-5311399 Feature type: polypeptideProtein Sequence
Length: 589
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 1.027 | 0.988 | 0.527 | 1.302 | 1.175 | 0.606 | 0.934 | 1.056 | 1.055 | 0.875 | 1.398 | 0.943 | 0.718 | 1.767 | 0.897 | 1.28 | 1.029 | 0.914 | 0.599 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9389
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.698
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RGRQRRRSRK,KKTEAQWFTELAEAWKRIR,RKTTATAETEGQQHQKRRV
|
— | — |
24-45
|
0.998
|
— | — |
0.000
|
— | — |
0.386
|
0.204
|
0.018
|
0.655
|
0.052
|
0.064
|
0.257
|
0.195
|
0.061
|
0.235
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009600
|
1.000
|
1.000
|
Hsc_gene_20856.t1
|
Hsc_gene_20856.t1
|
— |
A8WX27.2 Nonsense-mediated mRNA decay factor SMG9 [Caenorhabditis briggsae]
|
KAH7704825.1 protein SMG9-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000184
|
GO:0008150_0.956|GO:0009987_0.637|GO:0065007_0.605|GO:0003674_0.597|GO:0050789_0.588|GO:0050794_0.568|GO:0005575_0.533|GO:0110165_0.527
|
IPR027417+115-159+|IPR039177+31-410+
|
— | — | — |
PTHR14270+31-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-107;416-589
|
1.000
|
108-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
66553.480
|
8.682
|
12.500
|
29.542
|
8.489
|
52.632
|
47.368
|
16.299
|
13.243
|
49.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1538.653
|
2552.309
|
1222.349
|
959.770
|
1030.401
|
855.325
|
1449.844
|
1262.767
|
2164.728
|
1608.272
|
1846.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.292
|
-1.548
|
-0.239
|
— |
-0.254
|
0.772
|
0.456
|
0.343
|
— | — | — | — | — |
No JSON data available for plots.