Hg_chrom5_TN10mRNA_9978
Organism: Heterodera glycines Gene Locus: chr5:5311570-5314748 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.96 | 0.903 | 0.883 | 0.335 | 0.971 | 0.747 | 0.982 | 1.214 | 1.618 | 0.984 | 0.588 | 4.283 | 0.674 | 0.84 | 0.991 | 0.902 | 1.273 | 1.177 | 1.12 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9390
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.670
|
0.173
|
0.052
|
0.689
|
0.112
|
0.113
|
0.077
|
0.030
|
0.078
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009601
|
1.000
|
1.000
|
Hsc_gene_20855.t1
|
Hsc_gene_20855.t1
|
— |
Q23237.1 Proteasome subunit beta type-3 [Caenorhabditis elegans]
|
KAI1727744.1 proteasome subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0051603
|
GO:0005575_0.835|GO:0110165_0.824|GO:0005622_0.735|GO:0016020_0.706|GO:0008150_0.647|GO:0043226_0.625|GO:0043229_0.613|GO:0043227_0.604|GO:0043231_0.597|GO:0005737_0.555|GO:0032991_0.515
|
IPR001353+8-191+|IPR023333+5-205_9-191+|IPR029055+3-206_7-205+
|
— |
PF00227+8-191+Proteasome_subunit
|
— |
PTHR32194+5-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
8yvp_U
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
22577.140
|
5.997
|
-1.500
|
21.845
|
8.252
|
42.718
|
57.282
|
11.165
|
10.680
|
52.427
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
2503.875
|
1192.075
|
1616.689
|
2530.083
|
2600.660
|
2405.263
|
1783.808
|
2395.444
|
2729.231
|
3461.021
|
3147.396
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.210
|
0.949
|
0.755
|
— | — |
-0.421
|
— |
-0.282
|
— | — | — | — | — |
No JSON data available for plots.