Hg_chrom5_TN10mRNA_9979
Organism: Heterodera glycines Gene Locus: chr5:5314890-5320327 Feature type: polypeptideProtein Sequence
Length: 860
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.514 | 1.217 | 0.93 | 0.361 | 0.698 | 1.521 | 0.388 | 1.86 | 1.344 | 1.273 | 0.951 | 1.3 | 1.518 | 1.275 | 1.092 | 1.412 | 0.991 | 1.022 | 0.358 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9391
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.786
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KHKR,PTPKRKN,KRKNKKIGRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.866
|
0.107
|
0.010
|
0.372
|
0.047
|
0.079
|
0.050
|
0.045
|
0.119
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009602
|
1.000
|
1.000
|
Hsc_gene_20854.t1
|
Hsc_gene_20854.t1
|
— |
O13769.2 Ubiquitin-like-specific protease 2 [Schizosaccharomyces pombe 972h-]
|
KAF7640335.1 ULP_PROTEASE domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.887|GO:0110165_0.886|GO:0008150_0.866|GO:0005622_0.828|GO:0003674_0.716|GO:0016020_0.716|GO:0008152_0.705|GO:0043170_0.702|GO:0044238_0.702|GO:0043226_0.681|GO:0043229_0.668|GO:0019538_0.631|GO:0043227_0.622|GO:0043231_0.622|GO:0009987_0.616|GO:0065007_0.581|GO:0050789_0.568|GO:0003824_0.525|GO:0005737_0.522|GO:0036211_0.519|GO:0043412_0.519|GO:0050794_0.508|GO:0140096_0.507
|
IPR003653+494-710_510-716+|IPR038765+486-747+|IPR051947+293-760+
|
— |
PF02902+510-716+Ulp1_protease_family,_C-terminal_catalytic_domain
|
— |
PTHR46896+293-760+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
384-487
|
2.000
|
1-383;488-860
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
97859.990
|
9.712
|
36.000
|
24.651
|
12.209
|
51.744
|
48.256
|
15.349
|
9.302
|
48.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1908.745
|
2200.468
|
1485.808
|
1769.748
|
1668.093
|
1533.701
|
1864.851
|
1719.505
|
1845.599
|
2375.747
|
2148.541
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.796
|
-0.451
|
0.361
|
-0.117
|
— |
0.291
|
— |
0.258
|
— | — | — | — | — |
No JSON data available for plots.