Hg_chrom5_TN10mRNA_9980
Organism: Heterodera glycines Gene Locus: chr5:5320720-5325239 Feature type: polypeptideProtein Sequence
Length: 980
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 1.044 | 1.132 | 0.563 | 1.037 | 1.02 | 0.559 | 1.122 | 1.429 | 1.586 | 0.974 | 1.14 | 0.964 | 0.726 | 1.062 | 0.948 | 1.037 | 1.175 | 0.392 | 0.78 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9392
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.264
|
0.119
|
0.023
|
0.505
|
0.335
|
0.494
|
0.646
|
0.116
|
0.281
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009603
|
1.000
|
1.000
|
Hsc_gene_20853.t1
|
Hsc_gene_20853.t1
|
— |
P23514.1 Coatomer subunit beta [Rattus norvegicus]
|
KAI1727742.1 coatomer beta subunit appendage platform domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005198|GO:0005737|GO:0006886|GO:0016192|GO:0030117|GO:0030126
|
GO:0005575_0.853|GO:0110165_0.849|GO:0016020_0.749|GO:0005622_0.675|GO:0071944_0.656|GO:0005886_0.636|GO:0005737_0.617|GO:0043226_0.609|GO:0043229_0.598|GO:0008150_0.576|GO:0043227_0.554|GO:0043231_0.526
|
IPR002553+25-492+|IPR011710+677-817+|IPR011989+23-597+|IPR016024+25-581+|IPR016460+1-961_1-964+|IPR029446+824-955+
|
— |
PF01602+25-492+Adaptin_N_terminal_region|PF07718+677-817+Coatomer_beta_C-terminal_region|PF14806+824-955+Coatomer_beta_subunit_appendage_platform
|
G3DSA:1.25.10.10:FF:000444+19-584+Coatomer_subunit_beta
|
PTHR10635+1-961+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-980
|
5mu7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
109463.960
|
6.727
|
3.000
|
26.327
|
8.878
|
47.755
|
52.245
|
13.878
|
12.449
|
49.184
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkturquoise
|
3894.375
|
4960.865
|
3470.699
|
4977.086
|
5689.660
|
5972.140
|
5632.058
|
3550.842
|
3165.907
|
1818.453
|
2395.933
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.744
|
-0.132
|
0.628
|
0.161
|
— | — |
-0.854
|
0.807
|
— | — | — | — | — |
No JSON data available for plots.