Hg_chrom5_TN10mRNA_9981
Organism: Heterodera glycines Gene Locus: chr5:5326366-5330897 Feature type: polypeptideProtein Sequence
Length: 1,070
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.098 | 0.63 | 1.427 | 0.677 | 1.464 | 1.174 | 0.857 | 2.103 | 0.748 | 1.351 | 0.609 | 0.99 | 0.987 | 0.809 | 1.335 | 0.841 | 0.735 | 1.076 | 0.863 | 0.385 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9393
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
nucleus
|
RKHQPDGMKKKKKDE
|
— | — | — | — |
1-21
|
0.991
|
1.000
|
1.000
|
1.000
|
0.236
|
0.024
|
0.012
|
0.344
|
0.462
|
0.623
|
0.584
|
0.140
|
0.750
|
0.220
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009604
|
1.000
|
1.000
|
Hsc_gene_20852.t1
|
Hsc_gene_15148.t1;Hsc_gene_20852.t1
|
— |
G5ED46.1 Calsyntenin-1 [Caenorhabditis elegans]
|
KAH7727264.1 CASY-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0007156|GO:0016020
|
GO:0008150_0.813|GO:0005575_0.776|GO:0110165_0.774|GO:0009987_0.751|GO:0016020_0.667|GO:0071944_0.664|GO:0005886_0.648|GO:0005622_0.579|GO:0065007_0.535|GO:0032501_0.511|GO:0050789_0.511
|
IPR002126+67-153_72-151_132-151_151-164_154-248_158-247_174-255_206-232+|IPR013320+387-553+|IPR015919+146-247+|IPR045588+913-982+
|
SM00112+72-151_174-255+
|
PF00028+158-247+Cadherin_domain|PF19699+913-982+Calsyntenin_C-terminal
|
— |
PTHR14139+64-1051+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
315-380;951-1070
|
2.000
|
1-314;381-950
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
118661.850
|
4.887
|
-42.500
|
31.402
|
10.187
|
49.065
|
50.935
|
14.766
|
16.636
|
50.841
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
greenyellow
|
4115.389
|
4549.190
|
16601.847
|
5227.994
|
1914.162
|
2149.028
|
1297.827
|
7017.966
|
2060.062
|
1925.523
|
1983.182
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.640
|
— |
-1.560
|
-1.481
|
— |
-0.718
|
1.607
|
-2.295
|
— | — | — | — | — |