Hg_chrom5_TN10mRNA_9988
Organism: Heterodera glycines Gene Locus: chr5:5371423-5373029 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 0.946 | 1.216 | 0.401 | 0.727 | 1.193 | 0.9 | 1.017 | 1.357 | 1.296 | 0.749 | 1.368 | 1.373 | 1.174 | 1.542 | 0.955 | 0.858 | 0.925 | 0.447 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9398
|
— | — |
2.222
|
5.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKEEPRSKKSGKSSKKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.484
|
0.161
|
0.120
|
0.759
|
0.094
|
0.311
|
0.190
|
0.008
|
0.150
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000188
|
10.000
|
1.000
|
Hsc_gene_12385.t1
|
Hsc_gene_12353.t1;Hsc_gene_12385.t1;Hsc_gene_26337.t1
|
— |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAF7638997.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.830|GO:0003674_0.780|GO:0009987_0.767|GO:0005575_0.743|GO:0110165_0.743|GO:0005622_0.652|GO:0003824_0.650|GO:0016020_0.607|GO:0005737_0.587|GO:0065007_0.587|GO:0016787_0.581|GO:0050789_0.568|GO:0140096_0.568|GO:0016788_0.558|GO:0050794_0.557|GO:0016791_0.547|GO:0042578_0.547|GO:0004721_0.542|GO:0008152_0.536|GO:0044238_0.515|GO:0044237_0.513|GO:0043226_0.507
|
IPR004843+101-297+|IPR006186+71-344_99-126_128-155_161-185_162-167_199-225_229-256_286-306_308-324+|IPR029052+52-343_71-343+|IPR050341+12-334+
|
SM00156+71-344+
|
PF00149+101-297+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+12-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51
|
1.000
|
52-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
38519.050
|
9.001
|
8.500
|
25.581
|
10.465
|
46.221
|
53.779
|
14.535
|
11.047
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1862.338
|
97.556
|
59.632
|
149.308
|
362.106
|
4638.285
|
196.003
|
8644.186
|
46.170
|
2807.947
|
1624.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.943
|
0.478
|
1.436
|
1.248
|
3.693
|
-4.554
|
0.786
|
-5.316
|
-4.816
|
— | — | — | — |
No JSON data available for plots.