Hg_chrom5_TN10mRNA_9989
Organism: Heterodera glycines Gene Locus: chr5:5373990-5375652 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.207 | 0.804 | 0.686 | 0.542 | 0.786 | 1.048 | 1.385 | 0.786 | 2.166 | 0.85 | 0.858 | 1.85 | 1.223 | 0.968 | 0.898 | 0.854 | 0.979 | 1.048 | 0.0 | 0.37 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9399
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
3-23
|
0.997
|
1-31
|
1.000
|
— | — |
0.000
|
— | — |
0.105
|
0.906
|
0.003
|
0.249
|
0.079
|
0.045
|
0.071
|
0.011
|
0.047
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009606
|
1.000
|
1.000
|
Hsc_gene_6993.t1
|
Hsc_gene_6993.t1
|
— |
P53596.1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [Caenorhabditis elegans]
|
KAF7640318.1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.871|GO:0110165_0.863|GO:0005622_0.720|GO:0005737_0.713|GO:0016020_0.670|GO:0003674_0.634|GO:0008150_0.542|GO:0043226_0.530|GO:0043229_0.521|GO:0043227_0.502
|
IPR003781+26-101_63-100+|IPR005810+20-56_23-294_56-296+|IPR005811+153-277+|IPR016102+123-299_125-293+|IPR017440+242-255+|IPR033847+154-183+|IPR036291+17-124+
|
SM00881+26-101+
|
PF00549+153-277+CoA-ligase|PF02629+63-100+CoA_binding_domain
|
G3DSA:3.40.50.261:FF:000005+123-298+Succinate--CoA_ligase_[ADP-forming]_subunit_alpha,_mitochondrial
|
PTHR11117+63-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-318
|
7jmk_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
33514.830
|
8.905
|
7.500
|
20.126
|
7.233
|
39.623
|
60.377
|
11.635
|
8.491
|
54.717
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
1924.708
|
1150.441
|
2514.359
|
2304.557
|
2628.653
|
2424.939
|
1495.994
|
3208.136
|
1011.114
|
1764.608
|
1441.682
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
0.865
|
— |
0.158
|
— |
-0.687
|
0.299
|
-0.958
|
— | — | — | — | — |
No JSON data available for plots.