Hg_chrom5_TN10mRNA_9991
Organism: Heterodera glycines Gene Locus: chr5:5380280-5382481 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 0.579 | 0.74 | 1.014 | 0.905 | 1.102 | 1.966 | 0.905 | 0.905 | 0.611 | 0.754 | 0.532 | 0.817 | 2.436 | 1.016 | 1.228 | 0.668 | 0.548 | 0.522 | 0.466 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9401
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
PGKPGPKGP
|
— | — | — | — | — | — |
0.002
|
— | — |
0.062
|
0.046
|
0.006
|
0.134
|
0.483
|
0.249
|
0.349
|
0.005
|
0.591
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004114
|
1.000
|
2.000
|
Hsc_gene_6991.t1;Hsc_gene_6991.t2
|
Hsc_gene_6991.t1;Hsc_gene_6991.t2
|
— | — |
KAI6229100.1 Nematode cuticle collagen and Collagen triple helix repeat domain containing protein [Aphelenchoides fujianensis]
|
No
|
-0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+37-89_42-89+|IPR008160+302-360+|IPR050632+43-440+
|
SM01088+37-89+
|
PF01391+302-360+Collagen_triple_helix_repeat_(20_copies)|PF01484+42-89+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+43-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
141-442
|
1.000
|
1-140
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
45101.270
|
7.709
|
6.000
|
21.267
|
7.014
|
40.724
|
59.276
|
11.765
|
9.502
|
63.801
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
205.057
|
306.883
|
471.692
|
260.313
|
101.792
|
62.594
|
459.634
|
348.263
|
45.309
|
108.956
|
81.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.391
|
-0.375
|
-0.749
|
-1.387
|
-0.687
|
2.887
|
2.376
|
0.542
|
— | — | — | — | — |
No JSON data available for plots.