Hg_chrom5_TN10mRNA_9992
Organism: Heterodera glycines Gene Locus: chr5:5383998-5386269 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.701 | 0.701 | 1.139 | 0.8 | 1.044 | 1.011 | 0.884 | 1.16 | 1.134 | 1.38 | 0.773 | 1.092 | 1.225 | 1.16 | 1.563 | 0.795 | 0.647 | 1.195 | 0.714 | 1.092 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9402
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
34-54
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.323
|
0.233
|
0.017
|
0.520
|
0.212
|
0.557
|
0.364
|
0.010
|
0.495
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009608
|
1.000
|
1.000
|
Hsc_gene_6990.t1
|
Hsc_gene_6990.t1
|
— | — |
KAH7718895.1 Protein ARRD-6 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.870|GO:0110165_0.862|GO:0008150_0.797|GO:0003674_0.744|GO:0009987_0.726|GO:0005622_0.697|GO:0008152_0.676|GO:0016020_0.665|GO:0043226_0.632|GO:0043227_0.597|GO:0071944_0.573|GO:0065007_0.558|GO:0005886_0.546|GO:0050789_0.543|GO:0050794_0.527|GO:0005488_0.523|GO:0005737_0.522|GO:0043229_0.521|GO:0044238_0.503
|
IPR011021+11-150+|IPR011022+170-328_171-290+|IPR014752+4-159_160-325+|IPR014756+7-158_162-338+|IPR050357+7-390+
|
SM01017+170-328+
|
PF00339+11-150+Arrestin_(or_S-antigen),_N-terminal_domain|PF02752+171-290+Arrestin_(or_S-antigen),_C-terminal_domain
|
— |
PTHR11188+7-390+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
431-431
|
1.000
|
1-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
48697.920
|
7.602
|
6.000
|
27.610
|
11.369
|
44.084
|
55.916
|
15.081
|
12.529
|
48.492
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
282.779
|
525.656
|
850.980
|
397.904
|
174.461
|
126.468
|
199.619
|
417.449
|
120.380
|
137.173
|
129.976
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.466
|
-0.539
|
-0.988
|
-1.220
|
-0.450
|
0.668
|
1.623
|
-0.925
|
— | — | — | — | — |
No JSON data available for plots.