Hg_chrom5_TN10mRNA_9993
Organism: Heterodera glycines Gene Locus: chr5:5386562-5388814 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.255 | 0.805 | 0.37 | 0.773 | 0.611 | 0.679 | 0.679 | 0.916 | 1.629 | 1.816 | 0.185 | 1.198 | 2.885 | 0.548 | 1.205 | 1.251 | 0.634 | 1.142 | 1.253 | 0.779 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9403
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — |
7-30
|
0.868
|
— | — | — | — |
0.000
|
— | — |
0.039
|
0.117
|
0.016
|
0.126
|
0.313
|
0.692
|
0.567
|
0.020
|
0.505
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009609
|
1.000
|
1.000
|
Hsc_gene_6989.t1
|
Hsc_gene_6989.t1
|
— |
Q22397.2 Amino acid transporter protein 6 [Caenorhabditis elegans]
|
KAI1720208.1 amino acid permease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.840|GO:0005575_0.818|GO:0110165_0.818|GO:0016020_0.800|GO:0009987_0.770|GO:0006810_0.761|GO:0051179_0.761|GO:0051234_0.761|GO:0005886_0.757|GO:0071944_0.757|GO:0055085_0.708|GO:0003674_0.678|GO:0005215_0.565|GO:0022857_0.565|GO:0003333_0.552|GO:0006865_0.552|GO:0071705_0.531
|
IPR002293+11-412+|IPR050598+8-441+
|
— |
PF13520+11-412+Amino_acid_permease
|
G3DSA:1.20.1740.10:FF:000058+5-446+Amino_Acid_Transporter
|
PTHR11785+8-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-491
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
54794.440
|
8.544
|
11.500
|
14.664
|
16.497
|
33.401
|
66.599
|
8.961
|
5.703
|
47.251
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
378.331
|
82.670
|
117.597
|
234.327
|
185.863
|
226.531
|
308.151
|
173.800
|
49.050
|
1120.060
|
661.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.367
|
1.104
|
-0.367
|
0.301
|
0.452
|
-0.486
|
0.966
|
— | — | — | — | — |
No JSON data available for plots.