Hg_chrom5_TN10mRNA_9995
Organism: Heterodera glycines Gene Locus: chr5:5391416-5393665 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.034 | 0.646 | 0.859 | 0.383 | 1.157 | 1.282 | 1.025 | 1.25 | 1.42 | 1.276 | 0.8 | 1.144 | 0.694 | 0.908 | 0.85 | 1.071 | 1.184 | 1.221 | 0.855 | 0.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9405
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.504
|
0.350
|
0.062
|
0.670
|
0.192
|
0.198
|
0.283
|
0.109
|
0.148
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004115
|
1.000
|
2.000
|
Hsc_gene_6987.t1;Hsc_gene_6987.t2
|
Hsc_gene_6987.t1;Hsc_gene_6987.t2
|
— |
Q3ZCK3.1 3'(2'),5'-bisphosphate nucleotidase 1 [Bos taurus]
|
KAI1727818.1 inositol monophosphatase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046854
|
GO:0005575_0.657|GO:0110165_0.648|GO:0003674_0.556|GO:0005622_0.539|GO:0005737_0.504
|
IPR000760+19-346_55-75_255-276_287-311+|IPR020550+290-304+|IPR020583+145-158+|IPR050725+15-346+
|
— |
PF00459+19-346+Inositol_monophosphatase_family
|
G3DSA:3.30.540.10:FF:000012+15-215+Blast:Putative_inositol_monophosphatase_3|G3DSA:3.40.190.80:FF:000006+221-354+Bisphosphate_nucleotidase_1
|
PTHR43028+15-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
38714.130
|
5.840
|
-3.500
|
23.611
|
7.222
|
46.111
|
53.889
|
11.944
|
11.667
|
53.611
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
1220.516
|
1370.081
|
1283.557
|
1545.691
|
1923.558
|
1830.302
|
1820.041
|
1242.228
|
584.646
|
770.475
|
690.834
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.324
|
— |
0.377
|
0.284
|
— | — |
-0.665
|
0.694
|
— | — | — | — | — |
No JSON data available for plots.