SCN Proteipedia

Hg_chrom5_TN10mRNA_9997

Organism: Heterodera glycines Gene Locus: chr5:5396631-5399942 Feature type: polypeptide

Protein Sequence

Length: 402

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.55	1.504	1.04	0.6	0.995	1.084	0.681	1.244	1.548	1.445	0.565	1.902	1.106	0.909	1.269	0.746	0.816	1.281	0.957	1.024	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9407	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.964

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	KRLTRPFANVIHAKRAYR	—	—	43-84	0.958	—	—	0.000	—	—	0.804	0.224	0.010	0.619	0.080	0.086	0.085	0.014	0.092	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009612	1.000	1.000	Hsc_gene_6985.t1	Hsc_gene_6985.t1;Hsc_gene_6985.t2	—	P92208.1 Stress-activated protein kinase JNK [Drosophila melanogaster]	KAI6200699.1 CMGC/MAPK/JNK protein kinase, variant [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004707\|GO:0005524\|GO:0006468	GO:0008150_0.955\|GO:0009987_0.874\|GO:0065007_0.873\|GO:0050789_0.859\|GO:0003674_0.843\|GO:0003824_0.842\|GO:0016740_0.837\|GO:0050794_0.835\|GO:0050896_0.830\|GO:0005575_0.821\|GO:0110165_0.815\|GO:0140096_0.815\|GO:0016772_0.808\|GO:0051716_0.805\|GO:0016301_0.786\|GO:0016773_0.783\|GO:0007154_0.776\|GO:0023052_0.770\|GO:0007165_0.768\|GO:0005622_0.765\|GO:0004672_0.764\|GO:0035556_0.693\|GO:0141124_0.670\|GO:0004674_0.662\|GO:0000165_0.656\|GO:0032501_0.633\|GO:0008152_0.608\|GO:0005737_0.588\|GO:0044237_0.585\|GO:0043170_0.564\|GO:0006950_0.538\|GO:0016020_0.533\|GO:0044238_0.531\|GO:0004707_0.525	IPR000719+40-337+\|IPR003527+75-177+\|IPR008271+161-173+\|IPR008351+90-99_126-141_149-160_187-197_212-222_247-259_296-320_340-351+\|IPR011009+30-372+\|IPR050117+38-371+	SM00220+40-337+	PF00069+40-337+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000624+125-354+Mitogen-activated_protein_kinase\|G3DSA:3.30.200.20:FF:000028+36-150+Mitogen-activated_protein_kinase	PTHR24055+38-371+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	402-402	1.000	1-401	5awm_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.574	45868.760	6.180	-2.000	24.129	11.194	45.025	54.975	12.438	11.692	47.761

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1891.143	3833.054	2471.576	1963.382	1692.568	1633.858	2364.463	2833.669	1275.392	1019.995	1129.451

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.863	-1.102	-0.223	-0.246	—	0.544	0.690	—	—	—	—	—	—

No JSON data available for plots.

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