Hg_chrom6_TN10mRNA_11193
Organism: Heterodera glycines Gene Locus: chr6:17893-23739 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.699 | 1.533 | 0.469 | 0.198 | 0.334 | 3.453 | 0.682 | 1.433 | 0.764 | 1.045 | 0.304 | 0.674 | 0.478 | 0.827 | 0.643 | 0.696 | 1.221 | 0.695 | 0.0 | 0.758 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10551
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.758
|
0.220
|
0.018
|
0.447
|
0.127
|
0.056
|
0.060
|
0.055
|
0.047
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002279
|
1.000
|
3.000
|
Hsc_gene_8182.t1;Hsc_gene_8182.t2;Hsc_gene_8182.t3
|
Hsc_gene_8182.t1;Hsc_gene_8182.t2;Hsc_gene_8182.t3
|
— |
Q7T3I7.2 RNA-binding protein 38 [Xenopus laevis]
|
KAF7639015.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.900|GO:0009987_0.769|GO:0050789_0.655|GO:0065007_0.655|GO:0003674_0.644|GO:0005488_0.642|GO:0005575_0.622|GO:0110165_0.622|GO:0050794_0.595|GO:0097159_0.534|GO:0005622_0.532|GO:0003676_0.521|GO:0032502_0.507
|
IPR000504+18-95_19-91_20-77+|IPR012677+9-103+|IPR035979+12-94+|IPR050886+12-285+
|
SM00360+19-91+
|
PF00076+20-77+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000077+9-101+RNA-binding_motif_protein_24
|
PTHR48024+12-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;330-349
|
1.000
|
26-329
|
4cio_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
36137.110
|
8.469
|
7.000
|
12.607
|
7.163
|
44.986
|
55.014
|
8.023
|
4.585
|
59.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1956.324
|
2899.687
|
2276.126
|
1052.115
|
566.561
|
1390.412
|
221.903
|
3504.455
|
856.352
|
3449.933
|
2338.398
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.579
|
-1.600
|
-1.005
|
-0.924
|
1.310
|
-2.637
|
1.234
|
-3.840
|
— | — | — | — | — |
No JSON data available for plots.