Hg_chrom6_TN10mRNA_11195
Organism: Heterodera glycines Gene Locus: chr6:27680-29827 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.55 | 1.174 | 0.229 | 1.523 | 0.526 | 0.647 | 0.676 | 0.946 | 2.594 | 1.535 | 0.526 | 2.227 | 2.454 | 0.667 | 0.451 | 1.172 | 0.931 | 0.908 | 0.971 | 1.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10553
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.737
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.112
|
0.080
|
0.018
|
0.077
|
0.469
|
0.248
|
0.258
|
0.019
|
0.828
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001346
|
5.000
|
0.000
|
0.000
|
— | — | — |
KAI1731304.1 serpentine type 7TM GPCR chemoreceptor srsx domain-containing protein [Ditylenchus destructor]
|
No
|
-0.470
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+30-299+|IPR017452+36-127+|IPR019424+32-297+|IPR047130+24-298+
|
SM01381+30-299+
|
PF10320+32-297+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+24-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
35993.830
|
7.987
|
7.000
|
11.987
|
17.350
|
33.438
|
66.562
|
7.571
|
4.416
|
44.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
43.720
|
41.754
|
53.250
|
22.724
|
12.542
|
9.267
|
6.579
|
15.945
|
86.143
|
65.896
|
74.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.015
|
-1.121
|
-0.898
|
— | — | — |
-1.143
|
— | — | — | — | — |
No JSON data available for plots.