Hg_chrom6_TN10mRNA_11199
Organism: Heterodera glycines Gene Locus: chr6:47400-54974 Feature type: polypeptideProtein Sequence
Length: 606
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 1.382 | 1.08 | 0.455 | 0.715 | 0.889 | 0.864 | 1.32 | 1.32 | 1.182 | 0.55 | 1.359 | 1.513 | 1.079 | 1.078 | 1.273 | 0.893 | 0.975 | 0.762 | 1.407 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10557
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
chloroplast
|
— | — | — |
6-54
|
0.838
|
1-22
|
0.924
|
1.000
|
1.000
|
1.000
|
0.039
|
0.059
|
0.007
|
0.132
|
0.269
|
0.212
|
0.349
|
0.043
|
0.865
|
0.287
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010173
|
1.000
|
1.000
|
Hsc_gene_23313.t1
|
Hsc_gene_23313.t1
|
— | — |
KAI1725558.1 electron transfer DM13 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.954|GO:0005575_0.901|GO:0110165_0.901|GO:0009987_0.894|GO:0016020_0.843|GO:0005622_0.771|GO:0043226_0.751|GO:0043229_0.735|GO:0016043_0.729|GO:0071840_0.729|GO:0043227_0.725|GO:0043231_0.720|GO:0006996_0.690|GO:0044085_0.684|GO:0022607_0.682|GO:0007049_0.676|GO:0022402_0.676|GO:0007010_0.675|GO:0000226_0.670|GO:0007017_0.670|GO:0007051_0.670|GO:0007059_0.670|GO:0051225_0.670|GO:0070925_0.670|GO:0140694_0.670|GO:0005634_0.575|GO:0043228_0.568|GO:0043232_0.568|GO:0003674_0.544|GO:0005694_0.540|GO:0005700_0.540
|
IPR019545+111-219_118-225_227-344_236-347_239-342+|IPR052126+92-357+
|
SM00686+118-225_236-347+
|
PF10517+239-342+Electron_transfer_DM13
|
— |
PTHR24036+92-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-606
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
67901.770
|
6.502
|
0.000
|
21.782
|
13.861
|
45.545
|
54.455
|
11.551
|
10.231
|
52.475
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1214.853
|
346.069
|
233.206
|
371.896
|
1512.282
|
4310.931
|
901.585
|
631.362
|
578.800
|
1765.635
|
1256.991
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.799
|
— |
0.783
|
1.992
|
1.527
|
-2.248
|
-2.885
|
0.659
|
— | — | — | — | — |