Hg_chrom6_TN10mRNA_11202
Organism: Heterodera glycines Gene Locus: chr6:78954-84692 Feature type: polypeptideProtein Sequence
Length: 522
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.557 | 1.292 | 0.975 | 0.661 | 1.277 | 1.326 | 0.502 | 1.533 | 1.533 | 1.502 | 0.871 | 1.69 | 0.905 | 1.253 | 1.368 | 0.985 | 0.597 | 0.813 | 0.884 | 0.62 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10560
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.602
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRHDDQVYMHKFHTKKCRH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.295
|
0.196
|
0.026
|
0.672
|
0.194
|
0.263
|
0.193
|
0.019
|
0.450
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_23309.t1;Hsc_gene_23309.t2
|
— |
O02626.1 MAP kinase-activating death domain protein [Caenorhabditis elegans]
|
KAH7732313.1 Protein AEX-3 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0005575_0.897|GO:0009987_0.897|GO:0110165_0.889|GO:0065007_0.729|GO:0050789_0.713|GO:0050794_0.692|GO:0016020_0.670|GO:0071840_0.632|GO:0016043_0.630|GO:0007154_0.616|GO:0023052_0.614|GO:0005622_0.605|GO:0010646_0.584|GO:0023051_0.582|GO:0071944_0.557|GO:0005886_0.550|GO:0050896_0.545|GO:0005737_0.521
|
IPR039980+34-445+
|
— | — | — |
PTHR13008+34-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-90
|
1.000
|
91-522
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
59895.780
|
7.045
|
5.000
|
28.544
|
9.579
|
49.808
|
50.192
|
15.517
|
13.027
|
44.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
611.085
|
829.440
|
830.770
|
368.298
|
155.893
|
307.290
|
302.198
|
759.024
|
1076.996
|
533.410
|
766.375
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.226
|
-1.308
|
-1.066
|
-1.271
|
0.993
|
— |
1.203
|
-1.190
|
— | — | — | — | — |
No JSON data available for plots.